Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 259 5e-64 >seq1 Length=5851329 Score = 259 bits (286), Expect = 5e-64 Identities = 553/818 (68%), Gaps = 20/818 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || |||||| | ||||| | |||||| || || | | || || || || | ||| Sbjct 4934326 TAGAAATCAGCGTCTAACGTAAAAACGCGTTCCTCCTCTGTGGACATTACACCGAATTTC 4934267 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||||||| || | || |||||||| || ||||||||||| | ||| | ||| || Sbjct 4934266 TGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGAGATTAACC 4934207 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 |||||||||||||| ||| | | || | | || | |||| ||||||| | | Sbjct 4934206 ATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAACAGG 4934147 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 ||| |||| | || ||||| | | |||||||| | | ||||| || || | | Sbjct 4934146 TGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCATATCA 4934087 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | || || | | |||| || || ||| || || ||||| || || | Sbjct 4934086 ACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATTTCT 4934027 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAAT 13881 | ||| || | ||| || | || | | || | | || | ||| ||||||| Sbjct 4934026 TTGATACGTTCTTCAGATGGTT--TGTTCTCCAAGTAGCTGTACATAAGACATGCAAAAT 4933969 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 ||| || || |||||||||| ||| | || ||||| |||||| || ||||||| Sbjct 4933968 CACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAGGCATCA 4933909 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 | || || || || | ||| ||||| ||||||||||| ||||| |||||||||||||||| Sbjct 4933908 AGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTCCCTCAA 4933849 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 | || || || || |||| ||||||||||| | || ||||| | | |||||| || Sbjct 4933848 CAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAATCCATCTTA 4933789 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT-AAATAAATAT 14120 |||||| |||| ||| || | || || | | || | |||||| ||| ||| Sbjct 4933788 GAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTGAAAAGCTTAT 4933729 Query 14121 TCCTT--CTCTTTAGTACTTGAAATGTATGTATCAATAAG---TAAGCTATACATTTCAG 14175 ||||| || | | || |||||| || |||||||| | || ||||||||| Sbjct 4933728 TCCTTTCATCCTGATCAC---GAATGTAAGTTTCAATAAGCTTTGAG---TACATTTCAC 4933675 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTG 14233 || || |||||||| || || || ||||| || || | | || || |||| || Sbjct 4933674 TATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACC--TG 4933617 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 |||||| | |||||||| | ||||| || || || |||||||| || ||||| Sbjct 4933616 AACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGCAAA 4933557 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331 ||| ||||||| || ||||||||| |||| |||| Sbjct 4933556 AAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCAT 4933519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724479995800