Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 241 1e-58 >seq1 Length=5851329 Score = 241 bits (266), Expect = 1e-58 Identities = 549/818 (67%), Gaps = 20/818 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || |||||| | ||||| | |||||| || || | | || || || || | ||| Sbjct 4934326 TAGAAATCAGCGTCTAACGTAAAAACGCGTTCCTCCTCTGTGGACATTACACCGAATTTC 4934267 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||||||| || | || ||||| || || ||||||||||| | ||| | ||| || Sbjct 4934266 TGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGAGATTAACC 4934207 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 |||||||| ||||| ||| | | || | | || | |||| ||||||| || | Sbjct 4934206 ATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAACAGG 4934147 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 ||| |||| | || ||||| | | |||||||| | | ||||| || || | | Sbjct 4934146 TGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCATATCA 4934087 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 ||||| | || ||| | | |||| || || ||| || || || || || || Sbjct 4934086 ACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATTTCT 4934027 Query 13612 TTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAAT 13669 || ||| || | ||| || | || | | || | | || | ||| ||||||| Sbjct 4934026 TTGATACGTTCTTCAGATGGTT--TGTTCTCCAAGTAGCTGTACATAAGACATGCAAAAT 4933969 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 ||| || || |||||||||| ||| | || ||||| |||||| || ||||||| Sbjct 4933968 CACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAGGCATCA 4933909 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 | || || || || | ||| ||||| ||||| ||||| ||||| |||||||||||||||| Sbjct 4933908 AGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTCCCTCAA 4933849 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | || || || || |||| ||||||||||| | || ||||| | | |||||| || Sbjct 4933848 CAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAATCCATCTTA 4933789 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA-AATGT 13908 |||||| |||| ||| || | || || | | || | |||||||| | | | Sbjct 4933788 GAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTGAAAAGCTTAT 4933729 Query 13909 TCCTT--CTCTTTAGTACTTGAAATGTATGTATCAATAAG---TAAGCTATACATTTCAG 13963 ||||| || | | || |||||| || |||||||| | || ||||||||| Sbjct 4933728 TCCTTTCATCCTGATCAC---GAATGTAAGTTTCAATAAGCTTTGAG---TACATTTCAC 4933675 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTG 14021 || || ||||| || || || || ||||| || ||| | | || || |||| || Sbjct 4933674 TATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACC--TG 4933617 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || ||| | |||||||| | || || || || ||||||||||| || ||||| Sbjct 4933616 AACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGCAAA 4933557 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14119 ||| ||||||| || ||||||||| |||| |||| Sbjct 4933556 AAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCAT 4933519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585288354680