Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=5851329 Score = 131 bits (144), Expect = 2e-25 Identities = 476/727 (65%), Gaps = 31/727 (4%) Strand=Plus/Plus Query 125145 TTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTC 125203 |||||||| ||||| | || ||||| || |||||||| ||| | ||||| | ||||||| Sbjct 4933548 TTGGCCTTTTTTGCTGCATCAGATGGTATTGTCAACGAGAATTTAGTTGAAA-GATTCTC 4933606 Query 125204 TCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTT---ACGGATTCCAAATCATGATTG 125259 | || ||| | | || |||| | |||||| |||| |||||||| || | Sbjct 4933607 AAAGGAAGTTCAGG-TCCCTGAGG---CACGCTTTTTCTACGGTTTCCAAATTGCCATGG 4933662 Query 125260 AGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC 125319 | || | || ||||||||||| | || ||||| | |||||||| |||| | | Sbjct 4933663 AAAATATTCATAGTGAAATGTACTCAAAGCTTATTGAAACTTACATTCGTGATCAGGATG 4933722 Query 125320 GTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAAT 125379 | | | ||| || || || | || | || | || | || || ||| | | Sbjct 4933723 AAAGGAATAAGCTTTTCAATGCTTTGGATGAATTCCCATTCATCAGGAAGAAAGCTGATT 4933782 Query 125380 GGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCG 125439 ||| | | ||||| | ||| | || || | | | || | | | || |||| Sbjct 4933783 GGGCTCTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCG 4933842 Query 125440 CCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGC 125499 | || || ||||| || ||||| || ||| ||||| ||||| || ||||| ||||||| Sbjct 4933843 CAGCTGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGC 4933902 Query 125500 GCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTAC 125559 |||| | ||||| || | || ||| || ||||| || || ||||| ||||| |||| Sbjct 4933903 GCGGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTAC 4933962 Query 125560 ACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCG 125619 || |||| ||||| ||| ||| || ||| || ||| || | ||| | Sbjct 4933963 ACCGTGATTTTGCATGTCTTATGT---ACAGCTACTTG------GAGAACA-AACCATC- 4934011 Query 125620 ATGAA-AAGGTCATCA---ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 |||| || || |||| | || | | |||||||| || || || | || | ||| Sbjct 4934012 -TGAAGAACGT-ATCAAAGAAATAATTAAAGATGCCGTTAGTATTGAGAAGGAATATCTT 4934069 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAGTACAT 125734 || || | || || || |||||||| ||||||| || | ||||||| || || || Sbjct 4934070 ACTGATGCTCTCCCTGTTGATATGATTGGAATGAACT-CAGGTTTAATGTGTGATTATAT 4934128 Query 125735 AGAGTTTGTGGCAGATCGTCTACT-GTACGAGTTGATTGGCCGCAAGATTTACAACGCCA 125793 || | || || |||| || | ||| | || ||| | | ||| |||| || | | Sbjct 4934129 CGAATACGTTGCCGATCACCTGTTGGTAGAACTTAATT-GTCAAAAGCTTTATAATACTA 4934187 Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 | || || |||||||| ||| | | ||| | || ||||| ||||| || || |||| Sbjct 4934188 AAAACCCATTTGATTTTATGGTTAATCTCTCAATTGAAGGTAAAACCAATTTCTTTGAGA 4934247 Query 125854 AGAAGGT 125860 ||||||| Sbjct 4934248 AGAAGGT 4934254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053762478120