Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq220 448 9e-122 >seq220 Length=3625 Score = 448 bits (496), Expect = 9e-122 Identities = 883/1293 (68%), Gaps = 35/1293 (3%) Strand=Plus/Minus Query 1519 CGGCAGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAA 1578 |||||||| | |||| |||| || | | || ||| ||| | |||||| | || | Sbjct 3594 CGGCAGGAAAAAACGCTTTCACGTTCTCGTAAACCCCGTGACCAACGCCGGTCGAGTCGA 3535 Query 1579 TACCGATGTATTCGACGTTATATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGG 1638 | ||||| || ||||| || | |||||| ||||| ||||| |||||||||| | Sbjct 3534 TGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGCGTCAGCCTGGGCGC 3475 Query 1639 CAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCA 1698 |||||||| || |||||||||||||||||| || | ||| || || || | ||| Sbjct 3474 GGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTTACCGCCCGGCACGG 3415 Query 1699 CCGGCGGTGCCAGTACCACGCATCCGGCACTGTCGCC---------ACGGTGTGACGGGT 1749 | |||||||||| |||||||||||||| |||||||| || | | ||||| Sbjct 3414 CTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGTACCTTTCGCCGGGT 3355 Query 1750 CGTAACCAATCCATACCGGGCGGGAGCCGAACGGATTGGCGGCAAAG--GGTGCAT---A 1804 | ||||| ||||| || ||| |||| |||| ||| ||| || |||||| | Sbjct 3354 CATAACCGATCCACACTTCGCGCCAGCCAAACG----GGC-GCAGAGCCAGTGCATGAAA 3300 Query 1805 GTCTTCCCATTCTT-CCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACA 1863 ||| ||| ||| ||||| |||| |||||||| |||||||| || |||||| | Sbjct 3299 GTCGGTCCAGACTTCCCAGC-TGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAATA 3241 Query 1864 CCGATGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1923 | || || ||||| ||||| || ||||| | |||||| | | ||| | | ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 1924 TTTCGCGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCA 1982 || | | | | ||| |||| |||||| || | || ||||| || || || || Sbjct 3180 ACTC-CATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTTCC 3122 Query 1983 ATGGTGACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTA 2042 | |||||| ||||| || | || ||||| || || || || || ||| || | | Sbjct 3121 ACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGCTG 3062 Query 2043 TGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCA 2102 || | |||||| ||||| | |||| || ||| || ||||||||||| || Sbjct 3061 TGGGACAGGTCGATGTCCAC---CTTATCGGCTTTGTTGCGCCCACGGTTGAACAGCGCA 3005 Query 2103 CCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAG 2162 || ||||||||||| || || ||| | ||| |||| || ||||| |||||||| Sbjct 3004 CCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTTGT 2945 Query 2163 CGCAGGTGGCTCTGTGA--GGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCG 2220 ||| | | ||||| |||||||| || ||||| || |||||| |||| || |||| Sbjct 2944 CGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTCG 2887 Query 2221 GGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGT 2280 | ||||||||| ||| || | ||||| | |||| | | |||||| |||||| || | Sbjct 2886 GTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGCAT 2827 Query 2281 TGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCA 2340 |||||||||| || || | || |||||| || || ||||| || || ||| Sbjct 2826 TGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTA---GGAAGCACCATCGGATCGCCTTTCA 2770 Query 2341 GGTCAACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCG 2400 | || || || || ||| ||| |||||||||| | || || | ||||| | Sbjct 2769 GCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTGTG 2710 Query 2401 TTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCT 2460 |||||||| || || |||||||||||| | ||||| |||||| | ||| || | Sbjct 2709 CCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGCTT 2650 Query 2461 CGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCTCGGATGCGGT 2520 | |||| ||| ||||| |||||||| |||||||| || ||||| | | |||||||||| Sbjct 2649 CACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCGGT 2590 Query 2521 GCTCAAGCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAA-AGAAAATC 2579 ||||| ||||||| ||| || | | || | | || ||||||| Sbjct 2589 TGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG-AACATGGAGGAATGGAAAATC 2531 Query 2580 TGCTCCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCG 2639 | |||||||| || || || || |||| | |||||||| ||||| || ||| | Sbjct 2530 TCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTCTTTTCCGGTTGACGGCGCGGG 2471 Query 2640 CCTTTGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAG 2699 |||||||||||||| |||||||| || || | ||| || ||||||||| | | | Sbjct 2470 CCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCGCCATTGTTAAAC 2411 Query 2700 CGGTTGACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCA 2759 | || ||| || | || || |||||| |||||||||||||||| ||||| || Sbjct 2410 TTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGAAATCT 2351 Query 2760 CCGCCGGTTTTCTGCGGTTTGATGATGAGCTGG 2792 || ||| ||| || || ||||||||| Sbjct 2350 TTCCCTTCTTTGTGCTCCTTCATAATGAGCTGG 2318 Score = 367 bits (406), Expect = 3e-97 Identities = 538/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Minus Query 4429 GCTTGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCCGTGTCCGTAACGCCATTATCAA 4488 ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| | || Sbjct 781 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAA 722 Query 4489 ACGCCAGTCCCTTGATTTCATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTC 4548 ||| ||| | || || ||||||| ||| |||||||||||||||||||| ||||||| Sbjct 721 ACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTC 662 Query 4549 TGACCGCAGCAGCAATCCGATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCG 4608 | |||| ||| || ||| |||||||||||||| ||||||||||||||| ||| Sbjct 661 TAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCG 602 Query 4609 CAATGAAGCCCCGGCGCGCGTGATGAGCAAGGTCACTGACGAGGAAGGGCACACCACCTC 4668 | || || |||| | ||| ||| ||| ||| ||| | || | ||||| | Sbjct 601 TGAGGATGCACCGGATCACGTCATGGGCAGCACCACC-ACGGGC--GGTGAAACCACACC 545 Query 4669 ---TGAGGTCATCCGCGTGGGTAAGGGCGGTGATTATGCCAGCCTCGATGCACTGGTGAT 4725 || ||| | || || || || || || ||||||| ||| || || ||||||| Sbjct 544 GGGTGCGGTGAAA---GTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGAT 488 Query 4726 GGATGCGACCAACAATCTGATTGAGCCGTGGTAT--CAGGAAGACCCTGACCTTGTGGTG 4783 |||||| ||| | || || || |||||| | ||||| || || || |||||| Sbjct 487 GGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGACGATCTGGTGGTG 430 Query 4784 ATTGTGGGGCGTCAGCTGCTGGCGGACAAATATTTCCCCATCGTCAACAAGGAGCAGGAC 4843 ||| || ||| |||||||| | ||||| |||||||| | |||||||| || ||||| Sbjct 429 ATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAA 370 Query 4844 AACAGCGAAATGCTGGCCGCTGACGTCATCATCAGCCAGAAACGCATCGGTAACCTGCCG 4903 ||||| |||| ||||| || || | |||||||| ||||||||||| ||| ||||| | Sbjct 369 AACAGTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAG 310 Query 4904 GCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGCTCATCACGAAGCTGGAAAACCTG 4963 || || || | |||| ||||||| || ||||| |||| ||||| ||||| |||||| Sbjct 309 GCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTG 250 Query 4964 TCCATCTACTACATGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGAC 5023 ||||| |||| ||| |||| || ||||| | || || |||||||||| ||| Sbjct 249 TCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGAC 190 Query 5024 CGCGTGGAGAACTACGAGTCAATGAACATTGATTACGTGGTGGAAGACTACGCCGCCGGT 5083 || | || |||| || || | ||| | || ||||| || |||||| | || Sbjct 189 CGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCA 130 Query 5084 TGTCTGGTGGAAAAAATTAAGGTCGGTGATTTCTCCACACCGGCTAAGGCGACCGAAGAG 5143 ||||||||||| || || | ||||| ||| | || ||| ||| Sbjct 129 GCACTGGTGGAAAACATCCAGATTGGTGACTTC------------AGCGCCGCCGCAGAA 82 Query 5144 CCGGGAGCGTAACCGATGA---CGAGTCCCGCACAGC 5177 | ||||||||||| |||| ||||||||||| || Sbjct 81 GCCGGAGCGTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98207315428860