Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 >seq4 Length=2360143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||||||||| ||||| | | ||| | | ||||| Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCA 1035618 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||| || || || || | ||||| ||||| | Sbjct 1035617 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035558 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | ||||| |||||| || | || |||||||| Sbjct 1035557 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035498 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| || |||||||||||||| Sbjct 1035497 CCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||||||||| ||||| | | ||| | | ||||| Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036302 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||| || || || || | ||||||||||| | Sbjct 1036301 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 1036242 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | ||||| |||||| || | || |||||||| Sbjct 1036241 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036182 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| |||||||| || ||||| Sbjct 1036181 CCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569834120278