Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq220 448 1e-121 >seq220 Length=3625 Score = 448 bits (496), Expect = 1e-121 Identities = 887/1298 (68%), Gaps = 45/1298 (3%) Strand=Plus/Minus Query 1518 CGGCGGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAA 1577 |||| ||| | |||| |||| || | | || ||| ||| | |||||| | || | Sbjct 3594 CGGCAGGAAAAAACGCTTTCACGTTCTCGTAAACCCCGTGACCAACGCCGGTCGAGTCGA 3535 Query 1578 TACCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGG 1637 | ||||| || |||||||| | |||||| ||||| ||||| || ||||| | | Sbjct 3534 TGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGCGTCAGCCTGGGCGC 3475 Query 1638 CAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCA 1697 |||||||| || |||||||||||||||||| || | ||| || || || | ||| Sbjct 3474 GGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTTACCGCCCGGCACGG 3415 Query 1698 CCGGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCC---------ACGGTGTGACGGGT 1748 | |||||||||| ||||||||||||||||||||||| || | | ||||| Sbjct 3414 CTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGTACCTTTCGCCGGGT 3355 Query 1749 CGTAACCAATCCAGACCGGGCGGGAGCCGAACGGATTGGCGGCAAA--CGGCGCAT---A 1803 | ||||| ||||| || ||| |||| |||| ||| ||| | | | |||| | Sbjct 3354 CATAACCGATCCACACTTCGCGCCAGCCAAACG----GGC-GCAGAGCCAGTGCATGAAA 3300 Query 1804 GTCTTCCCATTCTT-CCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATA 1862 ||| ||| ||| ||||| |||| |||||||| |||||||| || |||||||| Sbjct 3299 GTCGGTCCAGACTTCCCAGC-TGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAATA 3241 Query 1863 CCGACGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1922 | ||||| ||||| ||||| || ||||| | |||||| | | ||| | | ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 1923 TTTC---GCGTTTAAGCTGCTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCT 1979 || ||| | ||| |||| |||||| | | || || || || || || | Sbjct 3180 ACTCCATGCG---CAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTT 3124 Query 1980 CAATGGTGACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGT 2039 | | |||||| ||||| || | || ||||| || || || || || ||| || | Sbjct 3123 CCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGC 3064 Query 2040 TATGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTT 2099 | || | |||||| ||||| | |||| || ||| || ||||| ||||| Sbjct 3063 TGTGGGACAGGTCGATGTCCAC---CTTATCGGCTTTGTTGCGCCCACGGTTGAACAGCG 3007 Query 2100 CACCGGACCAGAACGGATAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCG 2159 ||||||||||||||||||| || ||| | ||| |||| || ||||| |||||||| Sbjct 3006 CACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTT 2947 Query 2160 AGCGCAGGTGACTCTGTGA--GGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATT 2217 ||| | | ||||| |||||||| || ||||| || |||||| |||| || || Sbjct 2946 GTCGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTT 2889 Query 2218 CGGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGA 2277 ||| ||||||||| ||| || | ||||| | |||| | | |||||| |||||| || Sbjct 2888 CGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGC 2829 Query 2278 GTTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGT 2337 ||||||||||| || || | || |||||| || || ||||| || || | Sbjct 2828 ATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTA---GGAAGCACCATCGGATCGCCTTT 2772 Query 2338 CAGGTCAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTG 2397 ||| || || || || ||| ||| |||||||||| | || || | ||||| Sbjct 2771 CAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTG 2712 Query 2398 CGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGC 2457 | |||||||| || || |||||||||||| | ||||| ||||||| | ||| || Sbjct 2711 TGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGC 2652 Query 2458 CTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCG 2517 || |||| ||| ||||| |||||||| |||||||| || ||||| | | ||||||||| Sbjct 2651 TTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCG 2592 Query 2518 GTGCTCAAGCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAA-AGAAAA 2576 || ||||| ||||||| ||| || | | || | | || ||||| Sbjct 2591 GTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG-AACATGGAGGAATGGAAAA 2533 Query 2577 TCTGCTCCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCC 2636 ||| |||||||| || || || || |||| | |||||||| ||||| || ||| Sbjct 2532 TCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTCTTTTCCGGTTGACGGCGCG 2473 Query 2637 CGCCTTTGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGT 2696 ||||||||||||||| |||||||| || || | ||| || ||||||||| | ||| Sbjct 2472 GGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCG---CCATTGT 2416 Query 2697 --AAC-GGTTGACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGA 2753 ||| | || ||| || | || || |||||| | |||||||||||||| |||| Sbjct 2415 TAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGA 2356 Query 2754 AGTCACCGCCGGTTTTCTGCGGTTTGATGATGAGCTGG 2791 | || || ||| ||| || || ||||||||| Sbjct 2355 AATCTTTCCCTTCTTTGTGCTCCTTCATAATGAGCTGG 2318 Score = 363 bits (402), Expect = 3e-96 Identities = 537/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Minus Query 4428 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCCGTGTCCGTAACGCCATTATCAA 4487 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | || Sbjct 781 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAA 722 Query 4488 ACGCCAGTCCCTTGATTTAATCATGGCCGGTTTTAACGGCGTGAGGCGTGCCGAAACCTC 4547 ||| ||| | || || |||||| ||| ||||||||||||| |||||| ||||||| Sbjct 721 ACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTC 662 Query 4548 TGACCGCAGCAGTAACCAGATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCG 4607 | |||| ||| |||| | |||||||||||||| ||||||||||||||| ||| Sbjct 661 TAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCG 602 Query 4608 CAATGAAGCCCCGGCGCGCGTGATGAGCAAGGTCACTGACGAGGAAGGTCACACGACCTC 4667 | || || |||| | ||| ||| ||| ||| ||| | ||| | || || | Sbjct 601 TGAGGATGCACCGGATCACGTCATGGGCAGCACCACC-ACGGGC--GGTGAAACCACACC 545 Query 4668 ---TGAGGTCATCCGCGTGGGTAAGGGGGGTGATTATGCCAGCCTCGATGCACTGGTGAT 4724 || ||| | || || || || || || ||||||| ||| || || ||||||| Sbjct 544 GGGTGCGGTGAAA---GTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGAT 488 Query 4725 GGATGCGACCAACAACCTGATTGAGCCGTGGTAT--CAGGAAGACCCTGACCTTGTGGTG 4782 |||||| ||| | || || || |||||| | ||||| || || || |||||| Sbjct 487 GGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGACGATCTGGTGGTG 430 Query 4783 ATTGTGGGGCGTCAGCTGCTGGCGGACAAATATTTCCCCATCGTCAACAGGGAGCAGGAC 4842 ||| || ||| |||||||| | ||||| |||||||| | ||||||| || ||||| Sbjct 429 ATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAA 370 Query 4843 AACAGCGAAATGCTGGCCGCTGACGTCATCATCAGCCAGAAACGCATCGGTAACCTGCCG 4902 ||||| |||| ||||| || || | |||||||| ||||||||||| ||| ||||| | Sbjct 369 AACAGTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAG 310 Query 4903 GCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGCTCATCACGAAGCTGGAAAACCTG 4962 || || || | |||| ||||||| || ||||| |||| ||||| ||||| |||||| Sbjct 309 GCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTG 250 Query 4963 TCCATCTACTACATGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGAC 5022 ||||| |||| ||| |||| || ||||| | || || |||||||||| ||| Sbjct 249 TCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGAC 190 Query 5023 CGCGTGGAGAACTACGAGTCAATGAACATTGATTACGTGGTGGAAGACTACGCCGCCGGT 5082 || | || |||| || || | ||| | || ||||| || |||||| | || Sbjct 189 CGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCA 130 Query 5083 TGTCTGGTGGAAAAAATTAAGGTCGGTGATTTCTCCACACCGGCTAAAGCGACCGCAGAG 5142 ||||||||||| || || | ||||| ||| | || ||||||| Sbjct 129 GCACTGGTGGAAAACATCCAGATTGGTGACTTC------------AGCGCCGCCGCAGAA 82 Query 5143 CCGGGAGCGTAACCGATGA---CGAGTCCCGCACAGC 5176 | ||||||||||| |||| ||||||||||| || Sbjct 81 GCCGGAGCGTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104466471798324