Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 219 4e-52 >seq1 Length=5851329 Score = 219 bits (242), Expect = 4e-52 Identities = 530/793 (67%), Gaps = 22/793 (3%) Strand=Plus/Minus Query 12797 TAACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGAC 12856 |||| ||| |||||| |||| | ||| || || |||| | ||||| ||| Sbjct 4934332 TAACATTAGAAATCAGCGTCTAACGTAAAAACGCGTTCCTCCTCTGTGGACATTACACCG 4934273 Query 12857 ATTTTTTGATATTC-GCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAAT 12915 | ||| |||||||| | || || | || ||||| || || ||||| ||||| | || | Sbjct 4934272 AATTTCTGATATTCAGATACCT-TCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGAG 4934214 Query 12916 ATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAG 12975 ||| |||||||||| || || ||||| | | ||| |||| ||| | ||||| Sbjct 4934213 ATTAACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTAC 4934154 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 |||| || ||||| | || || || | ||||||| | |||||||||| || Sbjct 4934153 CAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAAT 4934094 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||| | ||| || || | | | | || || ||| ||| || || ||| Sbjct 4934093 CATATCAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAAT 4934034 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-----AGATGCTTAAACATCATA 13150 ||| ||| | || ||||||| | || | |||| | || ||| | ||| | | Sbjct 4934033 TATTTCTTTGAT-ACGTTCTTCA---GATGGTTTGTTCTCCAAGTAGCTGTA-CATAAGA 4933979 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 ||||||||||||| ||| | || ||||||| |||| ||| ||||| ||||| Sbjct 4933978 CATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAAC 4933919 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| | || || || |||| ||| ||||| |||||||| ||||| || || ||| Sbjct 4933918 CCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAAT 4933859 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 ||||| ||||| ||||| || || || | | ||| ||| | ||| ||||||| | Sbjct 4933858 ATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCA 4933799 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||| || ||||| | ||||| | | | | | | | || | || || Sbjct 4933798 ATCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTG 4933739 Query 13391 AATAAATAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAATAAGCT----AT 13445 || | | ||| ||| | | ||| || ||| |||| | |||||||||| | Sbjct 4933738 AAAAGCTTATTCCTTT-CATCCTGATCACGAATGTAAG----TTTCAATAAGCTTTGAGT 4933684 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 ||||||| ||||||||||||||| || ||||||||||| || ||| | | ||||| | Sbjct 4933683 ACATTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAG 4933624 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 ||||||||||| | |||||||| |||| || ||||| || || || || | Sbjct 4933623 GGACCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATG 4933564 Query 13566 CAGCaaaaaaaGC 13578 |||||||||| || Sbjct 4933563 CAGCAAAAAAGGC 4933551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979316724974