Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq4 134 3e-26 >seq1 Length=5851329 Score = 159 bits (176), Expect = 8e-34 Identities = 519/792 (66%), Gaps = 28/792 (4%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || |||||||| | |||||||| || ||||| ||| |||| || | |||| | Sbjct 4933551 GCCTTTTTTGCTGCATCAGATGGTATTGTCAACGAGAATTTAGTTGAAAGATTCTCAAAG 4933610 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || ||| | ||||| || | | ||| ||||| ||||| || || || ||||||||| Sbjct 4933611 GAAGTTCAGGTCCCTGAGGCACGCTTTTTCTACGGTTTCCAAATTGCCATGGAAAATATT 4933670 Query 268979 CATTCAGAGATGTACAGTCTAT--TAATAGATACTTATATAGATGATAACAACGAAAAGA 269036 ||| || |||||| || | | || || ||||| || |||| | | |||| || Sbjct 4933671 CATAGTGAAATGTAC--TCAAAGCTTATTGAAACTTACATTCGTGATCAGGATGAAAGGA 4933728 Query 269037 AAAGACTATTTTCTTCTATGAGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCT 269095 | | || || | || || || || | | | || || ||| |||| |||||| Sbjct 4933729 ATAAGCTTTTCAATGCTTTG-GATGAATTCCCATTCATCAGGAAGAAAGCTGATTGGGCT 4933787 Query 269096 CTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 || | |||||| |||| || ||| |||||| | || ||||||| || ||| Sbjct 4933788 CTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCGCAGCT 4933847 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || |||||||| || || || ||||| || || || ||| | ||||| | ||| Sbjct 4933848 GTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGCGCGGC 4933907 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 | ||||| || ||||| ||| || || || || | | || || || ||||| | Sbjct 4933908 TTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTACACCGT 4933967 Query 269273 GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACA-CAAACCTTCTCAAGATAGAGT 269331 || || || ||| | ||| ||| | || ||| | | |||||| ||| |||| | | Sbjct 4933968 GATTTTGCATGTCT--TATGTAC-AGCTA-CTTGGAGAACAAACCATCTGAAGAACGTAT 4934023 Query 269332 ATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCT 269388 | ||||| || |||| || ||| | | || | |||| ||| || || ||||| Sbjct 4934024 CAAAGAAATAATTAAAGAT---GCCGTTAGTATTGAGAAGGAATATCTTACTGATGCTCT 4934080 Query 269389 ATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATC 269448 || | ||| | || || ||||| | ||| || ||||| | | ||| | Sbjct 4934081 CCCTGTTGATATGATTGGAATGAACTCAGGTTTAATGTGTGATTATATCGAATACGTTGC 4934140 Query 269449 TGATAGATTGCTGGT-GTCTTTAGGGTTTAGTAAAAAA---TATAACGTTGAAAATCCGT 269504 ||| || |||| | ||| | || |||| ||||| | |||| || | Sbjct 4934141 CGATCACCTGTTGGTAGAACTTAA----TTGTCAAAAGCTTTATAATACTAAAAACCCAT 4934196 Query 269505 TTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAA 269564 || |||||||| ||| | ||| | |||||||| | |||||||| |||||| |||| Sbjct 4934197 TTGATTTTATGGTTAATCTCTCAATTGAAGGTAAAACCAATTTCTTTGAGAAGAAGGTAT 4934256 Query 269565 GTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCACTACAGATG 269624 | | ||||||||| | ||||||||||| || | || ||| |||| || ||| | Sbjct 4934257 CTGAATATCAGAAATTCGGTGTAATGTCCACAGAGGAGGAACGCGTTTTTACGTTAGACG 4934316 Query 269625 CAGAATTCTAAT 269636 | || ||||||| Sbjct 4934317 CTGATTTCTAAT 4934328 Score = 114 bits (126), Expect = 3e-20 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||| || || || ||||||||||| || || || || ||| Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | |||||| || || || || || || ||||||||||||||||| Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 104540 GTTTTTACAAATATCTGCATTTTGTGTACAGTATTTATTA 104579 || || || || || ||||||| || || | ||||| || Sbjct 5400325 GTCTTAACGAAAATTTGCATTTCGTCTAAA--ATTTAATA 5400288 >seq4 Length=2360143 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| ||||| |||||||| || || || |||||||||||| Sbjct 1035665 GTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCA 1035606 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| || ||||| || || || ||||| || || || |||||||||| || Sbjct 1035605 GCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTG 1035546 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| |||||||| || || || || || || || | || Sbjct 1035545 ACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1035486 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1035485 TTAACAAAAATTTGCAT 1035469 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| || || |||||||| || || || |||||||||||| Sbjct 1036121 GTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCA 1036062 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| || ||||| || || || |||||||| || || |||||||||| || Sbjct 1036061 GCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTTGACTTG 1036002 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| |||||||| || || || || || || || | || Sbjct 1036001 ACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1035942 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1035941 TTGACGAAGATCTGCAT 1035925 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| || || |||||||| || || || ||||||||||| Sbjct 1036349 GTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCG 1036290 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| || ||||| || || || ||||| ||||| || |||||||||| || Sbjct 1036289 GCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGACTTG 1036230 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| |||||||| || || || || || || || | || Sbjct 1036229 ACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1036170 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1036169 TTGACAAAGATCTGCAT 1036153 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || ||||| || || || || ||||| |||||||| || || Sbjct 1036593 AAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 1036534 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||||||||| || || || | || ||||| || || || |||||||| ||||| Sbjct 1036533 CTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATC 1036474 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || ||||| || | ||||| ||| |||||||| || || || || Sbjct 1036473 TTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGT 1036414 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || |||||||| Sbjct 1036413 TTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| || || || || ||||| |||||||| || || || |||||||||||| Sbjct 1036805 GTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCA 1036746 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| || ||||| || || || ||||| || || || |||||||||| || Sbjct 1036745 GCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTG 1036686 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| |||||||| || || || || || || || | || Sbjct 1036685 ACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1036626 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1036625 TTGACAAAAATCTGCAT 1036609 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| || || || || || || |||||||| || || || ||||||||||| Sbjct 1035893 GTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCG 1035834 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| || || || ||||| || || || |||||||||| || Sbjct 1035833 GCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTG 1035774 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| |||||||| || || || || || || || | || Sbjct 1035773 ACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1035714 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1035713 TTAACAAAAATCTGCAT 1035697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389740404596