Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq220 401 1e-107 >seq220 Length=3625 Score = 401 bits (444), Expect = 1e-107 Identities = 825/1222 (68%), Gaps = 25/1222 (2%) Strand=Plus/Minus Query 2288 ACACCGAGACCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 2347 || ||| |||| | ||| || | ||| |||||||| || |||||||| | || || Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 2348 AGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 2407 || | |||| | || ||||| ||| |||||||| || ||||||||||||||| Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 2408 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTG 2467 || ||||| ||||| || |||| || | ||||| || | || || |||||||| ||| Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 2468 TCGCCGGTGTGGGA---------CGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAAT 2518 |||||| | || | |||||| || || ||||| || ||| |||| || Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 2519 GGATGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGC 2578 || | || | | ||||| ||| |||| ||| |||||||| | Sbjct 3322 GGGCGCAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGCC 3263 Query 2579 TGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGTCGACAAACTCGCACATAAACAGG 2638 |||||||| || ||||||||| || || |||||| |||||||||||||| | |||| Sbjct 3262 TGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGG 3203 Query 2639 TTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAG 2698 || | | || | |||| || | | |||||| |||||||| ||| | || Sbjct 3202 TTCTGGTATTCGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACAT 3143 Query 2699 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 2758 || ||| | || || || | ||||| ||||| || | || ||||| ||||| || Sbjct 3142 CCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGC 3083 Query 2759 AGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCG 2818 || || ||| || |||||| | |||||| || | | | | || || | Sbjct 3082 AGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACC---TTATCGGCTTTGTTG 3026 Query 2819 CGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAA 2878 ||||| |||||||||| | || |||||||| |||||||| | ||| | ||| |||| Sbjct 3025 CGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAT 2966 Query 2879 GGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAG--GCCATGCCCGAGGCGACTT 2936 || || ||||| || ||| ||| | ||||| || ||||| || || || |||| Sbjct 2965 GGCGTGGAAAAATAGGTTTGTCGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTT 2908 Query 2937 TGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTAT 2996 ||||||| | ||| || ||||| |||||||| ||||| | |||||| | |||| | | Sbjct 2907 TGCGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGT 2848 Query 2997 GGCTCTGCGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGA 3056 |||||| |||||| || |||||||||||| || ||| | || ||||| || Sbjct 2847 AGCTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAG----GA 2792 Query 3057 TG-ACAATCGGGTCGCCAGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTAT 3115 | || ||||| ||||| |||| || || || || | || || | ||||||||| Sbjct 2791 AGCACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTAC 2732 Query 3116 TCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTC 3175 | | || |||| |||||| | |||||||| || || |||||||||||| | ||||| Sbjct 2731 TGCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTA 2672 Query 3176 TTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGAT 3235 || ||| | ||| || || |||| |||||| || |||||||| |||||||| || Sbjct 2671 AGCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGAC 2612 Query 3236 TTGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTATTCG 3295 || || | | ||| || |||| | ||| || |||| || |||||| | | Sbjct 2611 TTCAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG 2552 Query 3296 AAAGACTGGTCGAA--GAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGT 3353 || ||| ||| |||||| ||||||||||| | | |||||| |||| | | Sbjct 2551 AA--CATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACAT 2494 Query 3354 TCTTTTTCGGCCTCTTACGCTCCCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGG 3413 |||||| ||| ||| || ||||| |||||||| ||||| ||||| | ||||| Sbjct 2493 TCTTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGG 2434 Query 3414 CCTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGA 3473 | ||||||||| | | | | | || ||||| | ||||| ||| ||| | | Sbjct 2433 CTTCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCA 2374 Query 3474 GCAGGTCAATCTCTTTGAAGTC 3495 |||||||||| |||||||| || Sbjct 2373 GCAGGTCAATTTCTTTGAAATC 2352 Score = 320 bits (354), Expect = 3e-83 Identities = 522/747 (70%), Gaps = 16/747 (2%) Strand=Plus/Minus Query 5177 CTCGACCTGTGGGCGCGTTTTCAGGACTTCCAGCGCCGCATCCGTGACGCCATTGTCAAG 5236 || |||||||||||||||| |||||| ||||||| || |||||| ||||||| || || Sbjct 780 CTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAA 721 Query 5237 CGTCAGGCGCTCGATCTCATTATGGCCGGTTTTAACGGTACCACCCGCGCTGACACCTCG 5296 ||||||||||| || | ||| ||| ||| |||||||| | || || | ||||| Sbjct 720 CGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCT 661 Query 5297 GACCGCACCAAAAATACGCTGCTGCAGGATGTGGCTGTAGGCTGGCTGCAAAAGTACCGC 5356 |||| | | |||| ||||||||||||||||| |||||||||||| || ||| Sbjct 660 AACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGT 601 Query 5357 AATGAAGCCCCGGCGCGCGTGATGAGCAACATCACCGACGCGGACGGTAAGGTCGTTTCG 5416 | || || |||| | ||| ||| ||| || |||| ||| |||| | | || Sbjct 600 GAGGATGCACCGGATCACGTCATGGGCAGCACCACCA---CGGGCGGTGAAACCACACCG 544 Query 5417 GCAGTGATTCGCGTCGGTAAAAATGGTGACTATGAGAACATCGATGCACTGGTGATGGAT 5476 | | | | ||||| ||| ||| || |||| ||| | || || ||||||||||| Sbjct 543 GGTGCGGTGAAAGTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGGAT 484 Query 5477 GCCACCAACAACCTGATTGACGAGGTTTATCAGGATGACCCGAACCTCGTCGCCATTGTT 5536 ||| ||| | || || |||| ||| || ||||| || | || || | ||| | Sbjct 483 GCCGTCAATGAGCTTATCGACGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTTGT 424 Query 5537 GGTCGTAAGCTGCTGGCTGACAAATATTTTCCTCTGGTGAACAAACAGCAGGAGAACAGC 5596 |||||| |||||||| ||||||| ||||| || ||||| |||||| | ||||| ||||| Sbjct 423 GGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGT 364 Query 5597 GAGTCGCTCGCGGCAGATATCATCATCAGCCAGAAGCGCATCGGCAACCTGCCTGCTGTG 5656 || || || || ||||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 363 GAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTG 304 Query 5657 CGCGTGCCGTACTTCCCGGCGAATGCCGTACTGGTAACCACTCTGGAAAACCTCTCTATC 5716 || | ||||| ||||||| ||||||| | ||| | ||| |||||| ||||| || || Sbjct 303 CGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATT 244 Query 5717 TATTTTATGGATGAGAGCCACCGCCGAAGCATTGATGAGAACCCGAAAAAAGACCGCGTG 5776 || | ||| || | || |||||| || || ||||||||| ||||| | Sbjct 243 TACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGATT 184 Query 5777 GAAAACTACGAGTCGATGAACATCGACTATGTGGTCGAGGTTTATGCCGCCG-GGTGC-C 5834 ||||||| || || | ||| | ||||||||| |||| || |||| | | || | Sbjct 183 GAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTA--CCGCTGCGCAGCAC 126 Query 5835 TGCTGGAAAACATCACCCTGGGCGATTTCACCGCACCTGCAGCACCGGAAAGCGGAGCCT 5894 || ||||||||||| | || || |||| ||| | ||| ||| |||||| | Sbjct 125 TGGTGGAAAACATCCAGATTGGTGACTTCAGCGCCGCCGCA------GAAGCCGGAGCGT 72 Query 5895 AAACCATGA---CGAGCCCCGCACAGC 5918 || |||||| ||| ||||||| || Sbjct 71 AACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97912917481012