Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 >seq1 Length=5851329 Score = 141 bits (156), Expect = 1e-28 Identities = 337/499 (68%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 |||||| ||||||| | | | ||| | | ||| | | ||||||||||||||| || | Sbjct 5221996 TCGAGTCAATTGTTGTCTCAAAGCATCAACATGGTTTTTATAAATATGAGCATCGCCAAT 5221937 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 || |||| ||| ||||| | | | || || | || ||||| | | || | | Sbjct 5221936 AGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATCATGTGGGTCATAAG 5221877 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 || || ||||| | ||||| || || || || || | ||| | | |||||| | Sbjct 5221876 TGAGTATGAAGCAATGTTAAATGGAACTCCCAAACCGACATCACCACTGCGTTGATACAA 5221817 Query 6981 TTGACAAGATAAAATATTGTCTATAGCATAAAATTGACACAA-TACATGACATGGAGGTA 7039 |||||| ||| ||| | ||||||||||| |||| | |||||||||||||| Sbjct 5221816 ATGACAACTTAACTCTCCATCTTGAACATAAAATTGA-ACAAGTGTATGACATGGAGGTA 5221758 Query 7040 AAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTG 7099 |||| | ||| | |||||||||||||||||||| | | ||| | ||| | | Sbjct 5221757 AAACCATTTTATCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTTCTTGAAGAAG 5221698 Query 7100 GATTTGTTTTTAATTTTGTTATAATTATTTG-TAATTGATCTATACCCTGACCTTCATAA 7158 | || |||||| |||| | | | || || || |||||| || || | ||| ||| Sbjct 5221697 GGTT-GTTTTTTATTTGATCAATAACATCTGCTAGTTGATCAATTCCTTTTCCTGTATAG 5221639 Query 7159 TTAGTATGACAATTTAT-ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGG 7217 | | || | | | | ||| | ||| ||||||||||||||||| || || |||| ||| Sbjct 5221638 TCGGCATCA-ACTCCCTCATATTCAGCACCAAAATGTCTCCATTGGAAACCGTAAACAGG 5221580 Query 7218 ACCTAAATCACCTTCTTCACGATGATTAAATCCTA----ATCGATTTAAATTAGATTTTG 7273 ||||||||||||||| | | | ||||||||| ||||| ||||| | | Sbjct 5221579 TCCTAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCGA--GAAATTCCCTACT- 5221523 Query 7274 ATCCATAAGCATCCCAAAT 7292 ||||| ||||||||||| Sbjct 5221522 -TCCATTTGCATCCCAAAT 5221505 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCAC-ATGTGGTATGAT 19416 ||| |||| |||||||| ||||| || || |||||||| || ||| |||||||| Sbjct 2650231 CCTCAAATTGGTGATAAATTTGCCTCAAGGCATGGACAAAAAGGTACTATG-GGTATGAT 2650289 Query 19417 TTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAA 19476 || ||||||||||||||||||||||| ||||| || || || || | |||||||| Sbjct 2650290 GTACCGTCAAGAAGATATGCCTTTTACAAAAGAAGGGTTATCTCCTGACATCATTATTAA 2650349 Query 19477 CCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||||| ||| ||||| Sbjct 2650350 TCCTCATGCCGTTCCATCTCGTATGAC 2650376 Score = 82.4 bits (90), Expect = 9e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 19326 TAGTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTT 19385 || |||||||| || | ||| | | || ||| ||| |||||||||| ||| | | Sbjct 1209698 TAATTAAAATTCAACTTAGACAGACAAGAAGACCAGAATTAGGTGATAAATTTAGTAGTA 1209639 Query 19386 TTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTA 19445 || ||| ||||| |||||| | || | || ||||| ||||||||||||| | Sbjct 1209638 GACATGGTCAGAAAGGTGTATGTGGATTAATATCTCCACAAGAGGATATGCCTTTTAATG 1209579 Query 19446 AAGATGGTATAGTG-CCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| || ||| || ||| ||||||| || || |||| || ||||||||| ||||| Sbjct 1209578 ATCTTGGAAT-GTGTCCTGATGTTATTATGAATCCTCATGGTTATCCAAGTCGTATGAC 1209521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867627789200