Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq17 158 2e-34 seq12 154 2e-33 seq31 152 8e-33 seq5 143 4e-30 seq10 140 5e-29 seq1 118 2e-22 >seq17 Length=713775 Score = 158 bits (174), Expect = 2e-34 Identities = 200/270 (74%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | ||||| |||||||||||||||||||| || ||||| ||| Sbjct 200693 GCTAAGCGCCATCGTAAAGTCCTTCGTGATAACATCCAAGGAATCACAAAACCAGCCATC 200634 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| | || || || |||||| |||||||| | | |||||||| | Sbjct 200633 CGCCGTCTTGCTCGCAGAGGAGGTGTAAAGCGTATCTCTGGACTCATTTATGAAGAAACC 200574 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 ||| |||| | || ||| ||| | ||| |||||||| ||||| | || || || | Sbjct 200573 CGTACTGTTCTTAA-ATCTTTCTTGGAGAACGTTATCCGTGATGCCGTTACA-TACTGTG 200516 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || |||||| | || |||||||| | |||||| |||||||||| | || | |||| Sbjct 200515 AACATGCTAAAAGAAAAACTGTCACTGCTATGGATGTCGTCTATGCTCTTAAGAGACAAG 200456 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||| || || ||| |||||| Sbjct 200455 GAAGAACCCTTTACGGATTCGGAGGTTAAT 200426 >seq12 Length=951128 Score = 154 bits (170), Expect = 2e-33 Identities = 197/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||| || |||||||||||||||||||| || |||||||| Sbjct 306697 GCAAAACGCCATCGTAAAGTTCTCCGTGATAACATCCAAGGAATCACGAAACCAGCTATT 306638 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | || || || || ||| | |||||| | ||||||| || | | Sbjct 306637 CGTCGTCTTGCCCGTAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAGGAAACT 306578 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||||| || | | | ||| || | ||||||| | ||| || Sbjct 306577 CGTACAGTTCTTAA-ATCTTTCTTAGAAAACGTCATTCGTGATGCTGTTACCTACTGTGA 306519 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||||||| | |||||| | ||||| || | ||| | ||||| Sbjct 306518 ACACGCTAAAAGAAAGACTGTCACCGCTATGGATGTTGTCTACGCTCTTAAAAGACAAGG 306459 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| || ||| |||||| Sbjct 306458 AAGAACCCTTTATGGATTCGGAGGTTAAT 306430 Score = 149 bits (164), Expect = 1e-31 Identities = 196/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||| || |||||||| ||||||||||| || |||||||| Sbjct 446712 GCAAAACGCCATCGTAAAGTTCTCCGTGATAACATTCAAGGAATCACGAAACCAGCTATT 446771 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | || || || || ||| | |||||| | ||||||| || | | Sbjct 446772 CGTCGTCTCGCCCGTAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAGGAAACT 446831 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||||| || | | | ||| || | ||||||| | ||| || Sbjct 446832 CGTACAGTTCTTAA-ATCTTTCTTAGAAAACGTCATTCGTGATGCTGTTACCTACTGTGA 446890 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||||||| | |||||| | ||||| || | ||| | ||||| Sbjct 446891 ACACGCTAAAAGAAAGACTGTCACCGCTATGGATGTTGTCTACGCTCTTAAAAGACAAGG 446950 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| || ||| |||||| Sbjct 446951 AAGAACCCTTTATGGATTCGGAGGTTAAT 446979 >seq31 Length=411617 Score = 152 bits (168), Expect = 8e-33 Identities = 199/273 (73%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| ||||||||||||||||| || || |||||||| Sbjct 144717 GCAAAACGCCATCGTAAAGTCCTTCGTGATAACATCCAAGGAATTACAAAACCAGCTATT 144658 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | | Sbjct 144657 CGTCGTCTTGCACGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAACT 144598 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||| || | ||| |||||||| |||||| || ||| || Sbjct 144597 CGTATAGTTCTTAA-ATCATTTTTGGAGAACGTTATCCGTGATGCCGTCACATATTGTGA 144539 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||| | || ||| | ||| | |||||| | || |||||| | ||| | ||||| Sbjct 144538 ACATGCTAAAAGAAAAACTATTACCGCTATGGATGTTGTTTATGCACTTAAAAGACAAGG 144479 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 | | ||||||| |||||| |||||| ||| Sbjct 144478 AAGAACTCTTTATGGATTTGGAGGTTAATTTTC 144446 >seq5 Length=1484661 Score = 143 bits (158), Expect = 4e-30 Identities = 185/250 (74%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||||||||| || |||||||| || ||||| |||||| | || Sbjct 765031 TCTTCGTGATAACATTCAAGGAATCACAAAACCAGCTATTCGCCGTCTTGCTCGTAGAGG 764972 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || ||| |||||||| | |||||||||| | ||| |||| | || ||||| Sbjct 764971 AGGTGTTAAACGTATCTCTGGACTCATCTATGAAGAAACCCGTACTGTTCTTAA-ATCTT 764913 Query 16573 CCTCA-AGACCGTTATCCATGATG-CTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 || | | | |||||||| ||||| | || || || || ||||||||| | || || Sbjct 764912 TCTTAGAAAACGTTATCCGTGATGCCGTTACA-TACTGTGAACACGCTAAAAGAAAAACA 764854 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || || |||||||| | || ||||| | || | ||||| | | |||| ||||| Sbjct 764853 GTTACTGCCATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTTTACGGTTTC 764794 Query 16691 GGAAGTTAAT 16700 ||| |||||| Sbjct 764793 GGAGGTTAAT 764784 >seq10 Length=1069219 Score = 140 bits (154), Expect = 5e-29 Identities = 185/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||| ||||||||||| ||||| || ||||||||||| |||||| | || Sbjct 695591 TCTCCGTGACAACATTCAAGGAATCACAAAGCCTGCCATCCGTCGTCTTGCTCGTAGAGG 695532 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || ||| |||||||| | |||| ||||| | ||| ||| | || ||| Sbjct 695531 AGGTGTTAAACGTATCTCTGGACTCATCTACGAAGAAACCCGTACCGTTCTTAAATCCTT 695472 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACT 16630 | | ||| ||| |||| ||||||| | ||| |||| || ||||| ||| | || ||| Sbjct 695471 CTTGGAGAACGTAATCCGTGATGCTGT-CAC-ATACTGTGAACACGCCAAAAGAAAAACT 695414 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 |||||| | |||||| |||||||||| | || | ||||| | | |||| || || Sbjct 695413 GTCACCGCTATGGATGTCGTCTATGCTCTCAAGAGACAAGGAAGAACCCTTTACGGATTC 695354 Query 16691 GGAAGTTAATCTT 16703 ||| ||| || || Sbjct 695353 GGAGGTTGATTTT 695341 >seq1 Length=5851329 Score = 118 bits (130), Expect = 2e-22 Identities = 189/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| || |||||||||||||| || || || ||||| Sbjct 329310 GCAAAACGCCATCGTAAAGTTCTTCGTGACAACATCCAAGGAATTACAAAACCCGCTATT 329251 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| || || | ||||| || || ||| | |||||| | | |||||||||| Sbjct 329250 AGACGTCTTGCACGCAGAGGTGGCGTTAAACGTATTTCTGGACTCATATATGAAGAGACA 329191 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| | || ||| ||||| | | || || | ||||||| | ||| || Sbjct 329190 CGTACTGTTCTCAA-ATCATTCCTTGAAAATGTCATTCGTGATGCTGTAACCTACTGTGA 329132 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||| | || ||||| || | |||||| | || ||||| | ||| | ||||| Sbjct 329131 ACATGCTAAAAGAAAAACTGTTACAGCTATGGATGTTGTATATGCTCTCAAAAGACAAGG 329072 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| |||||| | |||| Sbjct 329071 AAGAACTCTTTATGGATTTGGAGGATAAT 329043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074663301791