Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015-
06-02] 587 sequences; 52,178,999 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq1 251 1e-61
>seq1
Length=5851329
Score = 251 bits (278), Expect = 1e-61
Identities = 380/536 (71%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 193636 TTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGA 193695
|| |||| |||| || ||| |||||| || |||||||||||||||||| |||||
Sbjct 4802538 TTCAACCAACTGAAATTTATCATCTTGCAGCACAAAGTCATGTTAAAGTTAGTTTTGATT 4802479
Query 193696 TGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTC 193755
| || || ||||| | | || |||||| |||| || | ||| | ||||| || |
Sbjct 4802478 TACCTGAATATACAGCAGAGGTCGATGCTGTAGGTACATTAAGACTTCTTGATGCTATA- 4802420
Query 193756 GTATGTTGGGAA-TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814
||| || | | | | | || | | ||||| || |||||| ||||| |||
Sbjct 4802419 GTAGCATGCAATCTTCAACATAAAGTCAGATTTTATCAAGCTTCTACCTCAGAACTTTAT 4802360
Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874
|| |||| || | || | | ||| || |||||||| ||||||| ||| |||
Sbjct 4802359 GGAAAAGTTCAAGAAATCCCTCAAAAAGAGACAACACCATTCTATCCACGAAGTCCATAT 4802300
Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934
| |||||||| ||||| | ||||||||| || || ||||||||||| |||||||| |
Sbjct 4802299 GCAGTAGCAAAATTGTACGCTTATTGGATAATAAAAAATTATCGTGAAGCATATGGAATA 4802240
Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994
||| | ||||||| | |||||||| ||||| |||||||||||| | | ||||||
Sbjct 4802239 TTTGCTTGCAATGGTATTTTATTCAATCATGAATCACCAAGAAGAGGTAATAATTTTGTA 4802180
Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT 194054
|| | || |||||| | | || |||| ||| | | || | | |||| | ||||
Sbjct 4802179 ACAAGAAAAATTACAAGGGCTGTAGCTAAAATCAGTATAGGTGTTC--AAGAAACATTAT 4802122
Query 194055 --CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112
||||||||| | |||| || | |||||||| || || ||||| ||||||||||| |
Sbjct 4802121 TACTTGGTAATTTGGATGCCAAACGTGATTGGGGTCATGCGAAGGAGTATGTTGAAGCTA 4802062
Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168
||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||| ||
Sbjct 4802061 TGTGGAGAATCCTTCAACATGATGAACCAGATGACTTTGTTATTGCTACAGGTAAA 4802006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807549274563720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |