Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1 251 1e-61 >seq1 Length=5851329 Score = 251 bits (278), Expect = 1e-61 Identities = 380/536 (71%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 193636 TTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGA 193695 || |||| |||| || ||| |||||| || |||||||||||||||||| ||||| Sbjct 4802538 TTCAACCAACTGAAATTTATCATCTTGCAGCACAAAGTCATGTTAAAGTTAGTTTTGATT 4802479 Query 193696 TGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTC 193755 | || || ||||| | | || |||||| |||| || | ||| | ||||| || | Sbjct 4802478 TACCTGAATATACAGCAGAGGTCGATGCTGTAGGTACATTAAGACTTCTTGATGCTATA- 4802420 Query 193756 GTATGTTGGGAA-TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 ||| || | | | | | || | | ||||| || |||||| ||||| ||| Sbjct 4802419 GTAGCATGCAATCTTCAACATAAAGTCAGATTTTATCAAGCTTCTACCTCAGAACTTTAT 4802360 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 || |||| || | || | | ||| || |||||||| ||||||| ||| ||| Sbjct 4802359 GGAAAAGTTCAAGAAATCCCTCAAAAAGAGACAACACCATTCTATCCACGAAGTCCATAT 4802300 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 | |||||||| ||||| | ||||||||| || || ||||||||||| |||||||| | Sbjct 4802299 GCAGTAGCAAAATTGTACGCTTATTGGATAATAAAAAATTATCGTGAAGCATATGGAATA 4802240 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 ||| | ||||||| | |||||||| ||||| |||||||||||| | | |||||| Sbjct 4802239 TTTGCTTGCAATGGTATTTTATTCAATCATGAATCACCAAGAAGAGGTAATAATTTTGTA 4802180 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT 194054 || | || |||||| | | || |||| ||| | | || | | |||| | |||| Sbjct 4802179 ACAAGAAAAATTACAAGGGCTGTAGCTAAAATCAGTATAGGTGTTC--AAGAAACATTAT 4802122 Query 194055 --CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 ||||||||| | |||| || | |||||||| || || ||||| ||||||||||| | Sbjct 4802121 TACTTGGTAATTTGGATGCCAAACGTGATTGGGGTCATGCGAAGGAGTATGTTGAAGCTA 4802062 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 ||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||| || Sbjct 4802061 TGTGGAGAATCCTTCAACATGATGAACCAGATGACTTTGTTATTGCTACAGGTAAA 4802006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807549274563720