Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 >seq1 Length=5851329 Score = 161 bits (178), Expect = 1e-34 Identities = 533/825 (65%), Gaps = 26/825 (3%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| |||||||| ||||| | ||||| || || | | | ||||| | || | ||| Sbjct 4934327 TTAGAAATCAGCGTCTAACGTAAAAACGCGTTCCTCCTCTGTGGACATTACACCGAATTT 4934268 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT- 21245 ||||| ||| || | || || || ||||| || || ||||| | ||| | |||| Sbjct 4934267 CTGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGA--GATTA 4934210 Query 21246 -CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||||||||||| |||| || ||| | | || | |||| |||||| || Sbjct 4934209 ACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAAC 4934150 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | ||| || || |||| ||||| | ||||||||| | | ||||| || |||| Sbjct 4934149 AGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCATA 4934090 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | ||||| ||||| | || | | | || || ||| ||||| || |||||| Sbjct 4934089 TCAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATT 4934030 Query 21425 TTTATTATCCT------AGATGTACTAGGGGGATACAA-TAATTGTTTAAACATCAAACA 21477 | | | || | ||||| | | | ||| || ||| |||| | ||| Sbjct 4934029 TCTTTGATACGTTCTTCAGATGGTTT---GTTCTCCAAGTAGCTGT----ACATAAGACA 4933977 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || | || ||||| | ||||| ||||| || |||||| || Sbjct 4933976 TGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCC 4933917 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| || || | ||| || | ||| ||||| | ||||||| || || ||||| || Sbjct 4933916 AGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATAT 4933857 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 |||||||| || || || |||| || ||||| || | |||| | |||||| || Sbjct 4933856 TCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAAT 4933797 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAAT--CAATTGTATCAATAGCTT 21713 |||| || ||||| | || |||||| | || ||| |||| ||| | ||| | Sbjct 4933796 CCATCTTAGAGCCCAATCAGC--TTTCTTCCTGAT-GAATGGGAATT-CATCCAAAGCAT 4933741 Query 21714 TTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773 | ||||| | ||| ||||||| ||| ||| |||| Sbjct 4933740 TGAAAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAGTACA 4933681 Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 ||||| ||| |||||||| || || || || || ||||| ||| | | |||||| | Sbjct 4933680 TTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGA 4933621 Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| || | |||| || | | || || || || || || ||||| || | Sbjct 4933620 CCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAG 4933561 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG 21938 ||||||| ||||||| || ||||| || || || | ||||| Sbjct 4933560 CAAAAAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCATCTG 4933516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896897177880