Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq220 266 8e-67 >seq220 Length=3625 Score = 266 bits (294), Expect = 8e-67 Identities = 488/712 (69%), Gaps = 5/712 (1%) Strand=Plus/Plus Query 3200 CGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAG 3259 |||| |||||| | ||||| || || |||||||| ||||| | ||||| || || || Sbjct 2592 CGCATCCGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAA 2651 Query 3260 GCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCT 3319 || || | |||||||| |||| ||||| || || ||||| || || || ||||| Sbjct 2652 GCCCTGATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCA 2711 Query 3320 CAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGAG 3379 ||||| ||||| || ||||||||||||| | ||||| | | || ||| | ||| Sbjct 2712 CAGGCTCACGTTTTTAAGCAGTACATCATCGACTTCGC---CAAAGAAGTCGAGGTGGAG 2768 Query 3380 CTCACGGGCGATCCGATTATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAAC 3439 || | ||||||||||| | | || | ||| || ||||| |||||||| ||||| || Sbjct 2769 CTGAAAGGCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTACTTCCTCGGCACCAAT 2828 Query 3440 GCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCG 3499 || |||||||| ||| ||| |||||| | || | || || || || ||| | ||| Sbjct 2829 GCCCGCACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGATACCG 2888 Query 3500 AAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAG 3559 || |||| || ||| ||| || || ||||| ||||| || ||||| ||||| | Sbjct 2889 AAATTCCAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGCGACAA 2948 Query 3560 ACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCG 3619 || || || |||||| |||||| | || ||| || || |||||||| ||| ||| Sbjct 2949 ACCTATTTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTGCG 3008 Query 3620 CACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCG 3679 | ||||| || ||| | | ||| | | |||||| | |||| Sbjct 3009 CTGTTCAACCGTGGGCGCAACAAAGCCGATAAGGTGGACATCGACCTGTCCCACAGCAAT 3068 Query 3680 CTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGAT 3739 || | | |||| || |||||| |||| ||| | || ||||| || |||||| ||| Sbjct 3069 CTGGCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGAT 3128 Query 3740 GCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCC 3799 || || ||||| || |||| |||||| | ||| || ||||| ||||||||| | Sbjct 3129 GCAGTGCGCGGCGGATGTAACCTTTTCGACCTTGACCAGTTGCGCATGGAGTACAGCCCG 3188 Query 3800 GAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGAT-TCGCTGTCGGTGTTCAA 3858 | |||| | ||| ||||| |||||| |||| | |||||| |||| ||| || ||| Sbjct 3189 GCCGAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGC-GTCCGTATTCCC 3247 Query 3859 GCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3910 ||| || ||||| |||||||| ||| ||||||| ||| | ||| Sbjct 3248 GCTCAGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGAC 3299 Score = 221 bits (244), Expect = 3e-53 Identities = 492/720 (68%), Gaps = 30/720 (4%) Strand=Plus/Plus Query 741 GATGTTTTCGGCCAC-GCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 799 ||||||||| ||| || || ||||| | |||| || ||||| ||||| ||||| | Sbjct 112 GATGTTTTCCACCAGTGCTGC-GCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAACGG 170 Query 800 ATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTGCGCCGGCGCGCGC 859 |||| |||| || || ||||| |||| ||| || | | || || ||||| | | Sbjct 171 ATTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAACCGAACGGCGGCGGGTGT 230 Query 860 CTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGGGA 919 | ||||| |||| || ||||| || ||| |||| || |||||| | ||||| Sbjct 231 CCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCGGGA 290 Query 920 AGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGG 979 |||||||| | ||||||||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 291 AGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATATCGG 350 Query 980 CCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACTTGTCGTGC 1038 | || || || | |||| ||| |||||| | ||||||||||||||| | Sbjct 351 CAGCCAGTTTTTCACTGTTTTCCTG-GTCTTTGTTGACCAGCGGGAAATACTTGTCAGAC 409 Query 1039 AGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGG--AACCACGGGTCGA 1096 |||||||| || || || ||||| || || | || |||||| ||||| ||||| Sbjct 410 AGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCAC--GTCGA 467 Query 1097 TCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGC 1156 | | | ||| ||||||||| | ||||| ||||| | || || || | || | Sbjct 468 TAAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGCATATTCTCCACCTTTCC 527 Query 1157 CGACGAGCACC-TTGCCGGCCTGCTT----CGCGCCT--TCGTGCAGC-----ACGCGCT 1204 |||| |||| |||| || || ||| | | | |||| || ||| | | Sbjct 528 CGACTTTCACCGCACCCGGTGTGGTTTCACCGCCCGTGGTGGTGCTGCCCATGACGTGAT 587 Query 1205 GCGCTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGT 1264 || ||| ||| ||| | ||||||||||| ||||||| ||||||| |||||||| Sbjct 588 CCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGCAGCAGCGGGT 647 Query 1265 TTGCCTGACGGT---CGGTCGTCGCGGCCGCCTTCACGCCGTTCCAGCCGATCATGATGC 1321 || | ||||| ||| |||| || |||||||||||| ||||||||||||||| Sbjct 648 TTTCGCTACGGTTAGAGGTTTTCGC--ACG-CTTCACGCCGTTAAAGCCGATCATGATGC 704 Query 1322 GATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGT-CGGCGAAC 1380 | || |||||| | || | ||| ||| ||||| ||| ||||||| | | | ||| Sbjct 705 GGTCCAGCGCCTGACGTTTCACGATGGCGTTACGGATACGCAGCTGGAAATCCTGATAAC 764 Query 1381 TTCGCCCACATGTCGAGCTT-GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCA 1439 |||||||| ||| ||||| ||| || | | | |||| || ||| ||||| ||||| Sbjct 765 -GCGCCCACAGGTCCAGCTTCGCG-TAGGTCAGCACCGTATCAAAGTTGGTCTGTTCGCA 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120322361272094