Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=5851329 Score = 113 bits (124), Expect = 4e-20 Identities = 495/769 (64%), Gaps = 17/769 (2%) Strand=Plus/Minus Query 147132 TTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTTAAACCCTTTTCCCAAGAA 147191 |||||||| ||||| ||||| ||||||||||| || ||||| ||||| |||| |||| | Sbjct 2655577 TTTGCTGCCGGTTTAGTTCTTAAATAGTACATCCCTGTTTTCAAACCATTTTTCCAACCA 2655518 Query 147192 TAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCCACAAAAAGATTGAGCGAT 147251 || || || || | | | ||| ||||| || ||| |||||| || ||| Sbjct 2655517 TAAAAATGCATCGAACTACATATTCCATAAGTTGGTTTATTTACATGAAGATTAAGTGAT 2655458 Query 147252 TGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCCAACACTA-CTTTTTGTTT 147310 || ||||| | |||| || || || ||||| | ||| | || |||||||| Sbjct 2655457 TGAGATTGATCTACAAAAGGACCACGATCAATTGCCAT-TTCAATAATAGCTTTTTGTGG 2655399 Query 147311 AATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGAATTTCATCAATATTTTG 147370 |||||||||| | || || ||| | | |||| |||||| || |||||||| Sbjct 2655398 AATTTCCCAAACAGTTTTATGGAGTTCTCTAATATGTAATGGAATGTCGCATATATTTTG 2655339 Query 147371 TACAGATCCGTTGTTTTTAATAATTTTTATCATGATATC--TGTCGAATATACGTTGGTG 147428 | ||| || || |||| ||| |||| | | || || || | |||| || Sbjct 2655338 AATAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAATACCAAGG-- 2655281 Query 147429 TCTACGAGTTTATCG-ACGAGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCT 147487 ||| | ||| | |||||| ||| || | |||| | || || || | ||| | Sbjct 2655280 -CTAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCG 2655222 Query 147488 TCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGC 147547 || | || ||||| ||| | ||||| | || || || | || |||||||| | Sbjct 2655221 TCTTGTATATAAATTTGATGTATATGGCTCAATAGATTCATTACTCCCAAGAATCTGAGA 2655162 Query 147548 AGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCAT 147607 || | || || ||||| | | || || |||||||| || | || ||| || Sbjct 2655161 TGTAGAAGCAGTGGGCATTAATGAAACTAACAATGAATTACGAATACCAAATTTAGAAAT 2655102 Query 147608 TTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATC 147667 || |||| | | | ||| ||||| | || ||| | | | | ||||| ||| Sbjct 2655101 TTTCTGCTTCAAATTTTTCCAATTCCATAAATTGCTCG---GAGTGACACCCCACATATC 2655045 Query 147668 AAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAG 147727 | | || | || || | | |||| |||||| | | || || | ||| || | Sbjct 2655044 ATATTGAAGAATCCCCTTAGATACAGGTGATCCATCAAACGTTTCATAGGGTCCATGAAT 2654985 Query 147728 TTTAGCTAGTTCGATACTTTGACT-TAGTGCACCATAATAAATAGTTTCTGAAATCTTTT 147786 ||||||| ||| ||| | || |||||||||| |||||||||||| | || ||| Sbjct 2654984 CTTAGCTAATTC-ATAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTTC 2654926 Query 147787 TATTTAAATCTCTAGCCTCTTG-GCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATC 147844 |||| | ||| ||||| ||| | | || | | || ||||| || | || ||||| Sbjct 2654925 TATTAAGATCCCTAGCTTCTGGTGATG-CAAATGG-ATATCTCATGAGTAAAAATGTATC 2654868 Query 147845 CGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCTGAAATTCGAT 147893 ||||||||||| | || || || || ||||| ||| || ||| ||| Sbjct 2654867 TGCAAGTCCTTGTACTCCAATTCCAATAGGTCGATGTTTGGTATTTGAT 2654819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658887814640