Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq3 87.8 5e-12 >seq1 Length=5851329 Score = 172 bits (190), Expect = 1e-37 Identities = 486/735 (66%), Gaps = 21/735 (3%) Strand=Plus/Plus Query 111327 ACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGA 111386 ||||| || ||| | |||||| || ||||| |||||||| ||||||||||| ||| Sbjct 5221406 ACAACTAAAAAAACTTTTTGGAAAGGTATTGTTGAAGAACTGTTGTGGTTTATTTCGGGA 5221465 Query 111387 AGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCA 111446 || || ||||| || ||| | || | || ||||||||||||| ||||||| Sbjct 5221466 AGCACTAATGCGAAAGAATTAAGCGCCCGAGGAGTTAAAATTTGGGATGCAAATGGAAGT 5221525 Query 111447 CGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 | || ||||| ||| | || || || | |||||||||| | ||||| ||| Sbjct 5221526 AGGGAATTTCTCGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTAGGACCTGTT 5221585 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC----ATGCACGACTCATA 111562 ||||| || |||||| | || |||||||| || || | |||| ||||| | Sbjct 5221586 TACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGAGTTGATGC-CGACT---A 5221641 Query 111563 TGATTCACAGGGAACTGATCAATTA-CAGAATGTCATTGATCAAATTAAGAACAACCCAA 111621 | | | |||| ||||||| || |||| ||| ||||||||||| || |||||||| Sbjct 5221642 TACAGGAAAAGGAATTGATCAACTAGCAGA-TGTTATTGATCAAATAAAAAACAACCCTT 5221700 Query 111622 CTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTC 111681 |||| | | ||||| | ||| ||||| ||| || | || ||||||| | | Sbjct 5221701 CTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTTTTAC 5221760 Query 111682 CACCATGTCAT-CTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATG 111740 | ||||||||| | ||| || |||||||| || || || | | || || || Sbjct 5221761 CTCCATGTCATACACTTGT-TCAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCATTTG 5221819 Query 111741 TATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTA 111800 ||||| || || |||| | ||| | || ||||| ||||| ||||| ||| |||| Sbjct 5221820 TATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCACTT 5221879 Query 111801 CTTACTTGCTTAATCGC--TCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTA 111858 | || | | || || |||| ||| ||| | ||||| || ||||| || Sbjct 5221880 ATGACCCACATGATTGCAAAAATTTGTGGAATAACAA--CTGGTGATTTTGTTCACACTA 5221937 Query 111859 TCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTGAAGCGCA 111918 | || ||||| ||| |||| | |||||| ||||||| | | | ||| |||| || Sbjct 5221938 TTGGCGATGCTCATATTTATAAAAACCATGTTGATGCTTTGAGACAACAATTGACTCGAG 5221997 Query 111919 AACCATACGATTTCCCAACGATTCATATCAATA----ACATGCCGAAAACAATCTTTGAC 111974 |||| ||| |||||||| ||| | || || | | ||| ||||| ||| Sbjct 5221998 AACCCTACCCATTCCCAACAATT-AGATTTGTAGGGGATAATTTGAATACAATTGATGAT 5222056 Query 111975 GTCACATCTGATGATATTATTCTGAATGATTACAAGTGTCACCCGAAGATTCACATGGAT 112034 | || || ||| |||||||||| | ||||||| | ||| || ||| | ||| | Sbjct 5222057 TTTACTTCCGATAATATTATTCTCGAGAATTACAAATCTCATCCTTTAATTAAAATGAGT 5222116 Query 112035 ATGTCTGCATGATTA 112049 ||| ||| | |||| Sbjct 5222117 ATGGCTGTCTAATTA 5222131 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/213 (69%), Gaps = 7/213 (3%) Strand=Plus/Plus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGAT----GAACAATGAACGTT-CATTCGCGGAA 22491 ||| || || |||||||| || | |||||| || || || | | | || | ||| Sbjct 4933769 GAAGAAAGCTGATTGGGCTCTAAGATGGATTGCTGATAAA--AATGCTACTTTTGGAGAA 4933826 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | ||||| || || | ||||| || || ||||| || || ||||| ||| || Sbjct 4933827 CGCGTAATTGCTTTCGCAGCTGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATA 4933886 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || || || | | ||||| || |||| ||||||||||||||| | Sbjct 4933887 TTCTGGCTTAAGAAGCGCGGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCC 4933946 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 ||||||||||| || || |||||||| ||| Sbjct 4933947 CGAGATGAGGGGCTACACCGTGATTTTGCATGT 4933979 >seq3 Length=2731838 Score = 87.8 bits (96), Expect = 5e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 145535 ATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGG 145594 ||| ||||| ||| ||||| || | |||||| | | |||| || |||| || Sbjct 1987083 ATCATCATCCTTAAAACCAGTACCTAGCTTGCAAATAGTTTGATACTCTTCCATATCGTA 1987142 Query 145595 ATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATA 145654 ||||| || || || || | ||||| | |||||| | ||| ||| ||| ||| Sbjct 1987143 GTCATAACAAGCCAGTAGATAACCTCCATAAAAACCAGTCCTTTTACCGGCACCATGATA 1987202 Query 145655 CCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714 || ||||| |||||||||| ||||||| | || |||||||||||||||| | Sbjct 1987203 TCCACCAATTACTACAAGATCAAGTGTATCACCAACACCATCAAGATAATCCTTTTTCAA 1987262 Query 145715 TTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTT 145774 ||| |||||||| | || | || | | |||||| | | || || || | || || Sbjct 1987263 TTTCAGCCAATTATGGGATCTCTTAGCTATTTCATATGTTGCATTCTCATCGAGTGTCTT 1987322 Query 145775 TACCATTA 145782 |||||||| Sbjct 1987323 TACCATTA 1987330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343797559034