Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 8e-15 seq4 93.3 3e-14 >seq22 Length=599982 Score = 95.1 bits (104), Expect = 8e-15 Identities = 212/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG-CGCATCTGCGC 6232 || || ||||||||||| | ||| | | |||||| ||||| |||||| || || || Sbjct 538232 AATGTCAATCGTAATGTAGTGGATCCATACTACCGTTACAAGATGCCGAAGCTTC-AAGC 538290 Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292 || || || ||||| || || || || || || ||||| | || ||| |||| | || Sbjct 538291 AAAAGTTGAAGGTAAAGGTAATGGGATCAAGACAGTCATAGCTAATATGGTTGAAATTGC 538350 Query 6293 TAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 |||||| || | | || | | || || || || ||||| || || ||| | || || Sbjct 538351 TAAGGCTCTAGAGAGACCGCCAATGTATCCAACAAAGTATTTTGGTTGTGAATTAGGAGC 538410 Query 6353 TCAGACGCAGTTTGATCACAAA-AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 ||| || | |||||| ||||| || || || | ||| ||||| || ||| | | Sbjct 538411 TCAAACCAATTTTGAT-ACAAAGAATGACCGTTACATTGTTAATGGTGATCATGATGCAA 538469 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | || | ||| | | ||||| || || ||| | |||||||| || ||| || | Sbjct 538470 CAAAATTACAGAATCTTCTTGATGGTTTCATTAGAAAGTTTGTTCTTTGTGCCAGTTGTG 538529 Query 6472 ATAACCCGGAGAC 6484 |||| || ||||| Sbjct 538530 ATAATCCAGAGAC 538542 >seq4 Length=2360143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||||||||| ||||| || | | | | | || || Sbjct 1036133 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036074 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| || || |||| | |||||| || | |||| ||||| ||||| | Sbjct 1036073 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 1036014 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | ||||| | || || || | || || ||||| Sbjct 1036013 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035954 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| |||||||| Sbjct 1035953 CCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||||||||| ||||| || | | | | | || || Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036302 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||||||| || |||| | |||||| || | || | || |||||||| | Sbjct 1036301 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 1036242 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | ||||| | || || || | || || ||||| Sbjct 1036241 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036182 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || |||||||| Sbjct 1036181 CCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||||||||| |||||||| | | | | | || || Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCA 1035618 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| || || |||| | |||||| || | |||| || || ||||| | Sbjct 1035617 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035558 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | ||||| | || || || | || || ||||| Sbjct 1035557 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035498 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || || || || |||||| || Sbjct 1035497 CCTGTCAAAGTCTTAACAAAAATTTGCATGGTT 1035465 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || ||||| || ||| ||||| || ||||||||||| | | | | | || || Sbjct 1036589 ACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036530 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||||||| || || | | |||||| || | |||| ||||| || || | Sbjct 1036529 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGA 1036470 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| ||||| | | ||||| | || || || | || || ||||| Sbjct 1036469 ATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036410 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| |||||||| Sbjct 1036409 CCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944803766797