Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq220 140 7e-29 >seq220 Length=3625 Score = 140 bits (154), Expect = 7e-29 Identities = 389/595 (65%), Gaps = 25/595 (4%) Strand=Plus/Minus Query 4702 ATTATGATCGGCTTTAACGGCACAAGTCGTGCGGCAACCAGTGATCGCAACAGCAACCCG 4761 || |||||||||||||||||| | |||||| |||| | | || | | |||||| Sbjct 702 ATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCTAACCGTAGCGAAAACCCG 643 Query 4762 TTATTGCAAGATGTGGCAAAAGGCTGGTTGCAGAAAATGCGTGAAGATGCCAAAGAGCGT 4821 | |||| |||||| ||||||||| |||||||||| ||||| ||||| || | Sbjct 642 CTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGTGAGGATGCACCGGATCAC 583 Query 4822 GTAATGAATGGCGAAAGCACAGAC-----AACCAA----------GTTTTAGTCGGCAAA 4866 || ||| || | ||| | | ||||| || |||||| ||| Sbjct 582 GTCATGGGCAGCACCACCACGGGCGGTGAAACCACACCGGGTGCGGTGAAAGTCGGGAAA 523 Query 4867 GGTCAAGAGTATGCCAATCTTGACGCACTCGTAATGGACGCCACCGAAGAACTTATTGAT 4926 ||| ||| |||||||| || ||||| | || ||||| ||| | | || ||||| || Sbjct 522 GGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGGATGCCGTCAATGAGCTTATCGAC 463 Query 4927 GAATGGCAT--CGTGATGACACCGATTTAGTGGTGATTACCGGTCGCAAGTTGCTTGCGG 4984 | ||| | | || || |||| | ||||||||| ||||| || |||| | | Sbjct 462 G--TGGTCTACCAGGACGATGACGATCTGGTGGTGATTTGTGGTCGTGAGCTGCTGTCTG 405 Query 4985 ATAAATATTTCCCGATTGTGAATCAGCAAAACGCACCAACCGAAGAACTTGCCGCTGATA 5044 | || ||||||||| | || || | | | | | | ||| |||| || || |||| Sbjct 404 ACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGTGAAAAACTGGCTGCCGATA 345 Query 5045 TTGTGATCTCACAAAAACGCATTGGGGGCTTAAAAGCGGTGCGTGTGCCGTTCTTCCCGG 5104 | | ||| || |||||||| || ||| | | || ||||||| ||||||||||||| Sbjct 344 TGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCGCCGTTCTTCCCGC 285 Query 5105 CGAATGCGATTTTAATCACTAAGCTGGAAAATTTAGCCATCTATGTGCAAGAGGGGACAA 5164 |||||||| | | ||||| ||||| || | |||| || ||| |||| || Sbjct 284 CGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATTTACTGGCAGGAGGACACCC 225 Query 5165 CCCGC---AAGCATATTGAGAACGTGCCGAAAAAAGACCGTATTGAAACCTACGAATCAG 5221 |||| | ||| || ||| |||||| ||||| ||||||| || ||||| | Sbjct 224 GCCGCCGTTCGGTTATCGACAAC---CCGAAACGTGACCGGATTGAAAACTTTGAATCCG 168 Query 5222 AAAATATCGACTACGTTGTCGAAGATTATGGCTGTGCGGCATTAATCGAAAACAT 5276 || | ||| || || || || || |||| || ||| | | |||||||| Sbjct 167 TTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCAGCACTGGTGGAAAACAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110357630732978