Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq1 89.7 4e-13 >seq4 Length=2360143 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || || ||| | ||| Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| |||||||| || |||||||| ||||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCA-AGACAAAGAGGGAATTCCACCAGACCA 1036271 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||| |||||| | || |||| | ||| | |||||| || Sbjct 1036272 ACAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAA 1036331 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || || || || || || Sbjct 1036332 TATTCAAAAGGAGTCAACCCTTCACTTGGTTCT 1036364 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || || ||| | ||| Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||| || || || ||||| ||||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAGGGAATCCCACCAGACCA 1035815 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||| |||||| | || |||| | ||| | ||||||||| Sbjct 1035816 ACAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAA 1035875 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || || || Sbjct 1035876 CATCCAAAAAGAGTCAACCCTTCACTTGGTTCT 1035908 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| ||||| ||||||||||| || ||| ||||||| | || || ||| | Sbjct 1035465 AACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCC 1035524 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || || | ||| |||| | ||| ||||| || || || ||||| | Sbjct 1035525 TTCTGATACAATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAGGGAATCCCACCAG 1035583 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| | | || || || || |||||| | || |||| | ||| | |||| Sbjct 1035584 ACCAACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATT 1035643 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||||||||| || || || || || || || || Sbjct 1035644 ATAATATTCAAAAGGAGTCAACCCTTCACTTGGTTCT 1035680 Score = 105 bits (116), Expect = 6e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | ||| Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||| |||| | ||| || || ||||| || ||||| ||| Sbjct 1036441 GATACAATTGA--CAATGTCAAGTCAAAGATTCA-AGATAAGGAAGGAATCCCACCAGAC 1036497 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || ||||| |||||| | || |||| | ||| | |||||| Sbjct 1036498 CAACAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTAC 1036557 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || || ||||| || Sbjct 1036558 AACATCCAAAAAGAGTCAACCCTTCACTTAGTTCT 1036592 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | ||| Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||| ||||| || ||||| ||||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAAGGAATCCCACCAGACCA 1036043 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || || |||||| | || |||| | ||| | |||||| || Sbjct 1036044 ACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAA 1036103 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || || || || || || Sbjct 1036104 TATTCAAAAGGAGTCAACCCTTCACTTGGTTCT 1036136 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || || ||| | ||| Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||| || || || ||||| ||||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAGGGAATCCCACCAGACCA 1036727 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || || |||||| | || |||| | ||| | |||||||| Sbjct 1036728 ACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAA 1036787 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || || || Sbjct 1036788 CATCCAAAAAGAGTCAACCCTTCACTTGGTTCT 1036820 >seq1 Length=5851329 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | || ||||| | ||||| | ||||| ||| | || Sbjct 5400305 AATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATC 5400364 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| | || |||| |||| || ||||||||||| || ||||| || Sbjct 5400365 AGATACCATCGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAAGGAATCCCACCAGA 5400421 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 |||||| || ||||||||||||| Sbjct 5400422 CCAACAACGTCTTATTTTTGCCGG 5400445 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| ||||| || || ||| | || || | || || ||| | || Sbjct 5040550 ATGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCC 5040609 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||| | || | ||| || ||| ||| |||||||| |||||||| |||||| Sbjct 5040610 GATACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAA 5040669 Query 25119 CAGCGGATTATTTTTGCCGG 25138 || ||| ||||||||||||| Sbjct 5040670 CAACGGCTTATTTTTGCCGG 5040689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324899944405