Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 232 7e-56 >seq1 Length=5851329 Score = 232 bits (256), Expect = 7e-56 Identities = 503/741 (68%), Gaps = 10/741 (1%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||| || ||||| || || || ||||||||||| || || ||||| Sbjct 4934282 CATTACACCGAATTTCTGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTC 4934223 Query 92850 CAA--AGATATCGAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| || | | | | ||| || || | |||||| ||||| || || Sbjct 4934222 AATTGAGAGATTAACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACA-AT 4934164 Query 92908 CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 || | ||| | | | ||| || || |||| || || | | |||| ||| | | | Sbjct 4934163 TAAGTTCTACCAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGT 4934104 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAAT-CTTTCTCGATTACAACG 93025 ||||||| | | | ||||| ||||| || || |||| || | ||||| || |||| Sbjct 4934103 TCATTCCAATCATATCAACAGGGAGAGCATCAGT-AAGATATTCCTTCTCAATACTAACG 4934045 Query 93026 GCTTCTTTCAAGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 || ||||| | |||||| | | | | || | | |||||| | | | || |||| Sbjct 4934044 GCATCTTTAATTATTTCTTTGATACGTTCT-TCAGATGGTTTGTTCTCCAAGTAGCTGTA 4933986 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||| | || ||||| || |||| || || ||||| || || |||||||| | Sbjct 4933985 CATAAGACATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTG 4933926 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 |||||| || || | || || || ||||| ||||| ||||| | |||||| ||| || Sbjct 4933925 TGTTAACCCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGA 4933866 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 || ||||| || || || ||||| || || | | ||||| ||||| | || || Sbjct 4933865 GAAGAATATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTT 4933806 Query 93265 A-CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | || |||||| ||| ||||||||| ||||| ||| | || | || | | || | Sbjct 4933805 ATCAGCA-ATCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCA 4933747 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 ||| || || || | || | || ||| ||| || ||||| || || || | | | Sbjct 4933746 AAGCATTGAAAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTG 4933687 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||||||||| ||| | ||| ||||| ||||||||||| ||||||||| | | || | Sbjct 4933686 AGTACATTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCT 4933627 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | || ||| ||||| | || ||||| || || | ||| || ||||| |||||||| | Sbjct 4933626 CAGGGACCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTG 4933567 Query 93504 ATGCTGCaaaaaaaGCCAATA 93524 |||| |||||||| ||||||| Sbjct 4933566 ATGCAGCAAAAAAGGCCAATA 4933546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856714033880