Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 >seq4 Length=2360143 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || |||||||| |||||||||||| Sbjct 1035926 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCG 1035867 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||||||||| || ||| |||| | | |||||||| || Sbjct 1035866 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 1035807 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||||| || | | |||| || || | | || Sbjct 1035806 GGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1035747 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| ||| || |||||||||||||| Sbjct 1035746 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || |||||||| || |||||| Sbjct 1036382 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCG 1036323 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||||||||| || ||| |||| | | |||||||| || Sbjct 1036322 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGT 1036263 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| ||||||| || | | |||| || || | | || Sbjct 1036262 GGAATTCCCTCTTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1036203 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| ||| || ||||| |||||||| Sbjct 1036202 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| || || | || || |||||||| ||||||||||| Sbjct 1036836 ACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGA 1036777 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | ||| ||||||||||| |||||| |||| | | |||||||| || || Sbjct 1036776 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGG 1036717 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||||| || | | |||| || || | | || || Sbjct 1036716 GATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1036657 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | |||||||| |||| ||| || |||||||||||||| Sbjct 1036656 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || |||||||| || ||||| Sbjct 1035698 ATACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCA 1035639 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||||||||| |||||| |||| | | |||||||| || Sbjct 1035638 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGT 1035579 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||||| || | | |||| || || | | || Sbjct 1035578 GGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1035519 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389 || || | || | |||||||| |||| ||| || |||||||| ||||||| |||| Sbjct 1035518 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGG-TTAA 1035463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || |||||||| || |||||| Sbjct 1036154 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCG 1036095 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||||||||| |||||| |||| | | |||||||| || Sbjct 1036094 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGT 1036035 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||||| || | | |||| || || | | || Sbjct 1036034 GGGATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1035975 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| ||| || || || |||||||| Sbjct 1035974 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||| || | || || |||||||| ||||||||||| Sbjct 1036610 ATACCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 1036551 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||||||||| || ||| |||| | | |||||||| || Sbjct 1036550 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 1036491 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||||| || | | |||| || || | | || Sbjct 1036490 GGGATTCCTTCCTTATCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCT 1036431 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| ||| || || || |||||||| Sbjct 1036430 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131394332244