Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq220 251 2e-62 >seq220 Length=3625 Score = 251 bits (278), Expect = 2e-62 Identities = 525/778 (67%), Gaps = 8/778 (1%) Strand=Plus/Plus Query 3188 CGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAG 3247 |||| |||||| | ||||| || || |||||||| ||||| | ||||| || || || Sbjct 2592 CGCATCCGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAA 2651 Query 3248 GCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATCTTCCTATCGGCCAGCAAGGCG 3307 || || | ||||| || |||| || || ||||| ||||| || ||||| ||||| Sbjct 2652 GCCCTGATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCA 2711 Query 3308 CAGGCGCACGTCTTCAAGCAATACATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGAG 3367 ||||| ||||| || ||||| ||||||| | ||||| | | | | ||| || ||| Sbjct 2712 CAGGCTCACGTTTTTAAGCAGTACATCATCGACTTCGC---CAAAGAAGTCGAGGTGGAG 2768 Query 3368 CTCACGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAAC 3427 || | ||||| ||||| | | || | ||| || ||||| |||||||| || || || Sbjct 2769 CTGAAAGGCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTACTTCCTCGGCACCAAT 2828 Query 3428 GCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCCG 3487 || || ||||| ||| || |||||| | ||| | || || || || ||| | ||| Sbjct 2829 GCCCGCACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGATACCG 2888 Query 3488 AAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAAG 3547 || |||| || || ||| || || || || ||||| || ||||| ||||| | Sbjct 2889 AAATTCCAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGCGACAA 2948 Query 3548 ACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCG 3607 ||||| || |||||| || || | || ||| || | |||||||| ||| ||| Sbjct 2949 ACCTATTTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTGCG 3008 Query 3608 CACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCG 3667 | ||||| || ||| | | ||| | | |||||| | |||| Sbjct 3009 CTGTTCAACCGTGGGCGCAACAAAGCCGATAAGGTGGACATCGACCTGTCCCACAGCAAT 3068 Query 3668 CTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGAC 3727 || | | |||| || |||||| |||| ||| | || ||||| || |||||| || Sbjct 3069 CTGGCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGAT 3128 Query 3728 GCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCC 3787 || || ||||| || ||||| |||||| | ||| || ||||| || |||||| | Sbjct 3129 GCAGTGCGCGGCGGATGTAACCTTTTCGACCTTGACCAGTTGCGCATGGAGTACAGCCCG 3188 Query 3788 GAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGACGAT-TCGCTGTCGGTGTTCAA 3846 | |||| | |||||||||||||||| | || | |||||| |||| ||| || ||| Sbjct 3189 GCCGAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGC-GTCCGTATTCCC 3247 Query 3847 GCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTC 3906 ||| || ||||| |||||||| ||| ||||| | ||| | ||||||| Sbjct 3248 GCTCAGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGAC---CGACTTTCA 3304 Query 3907 GCCGCTGCTGCTGCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCG 3964 | ||| ||||| ||||| || ||||| |||||| |||| || || |||||| Sbjct 3305 TGCACTGGCTCTGCGCCCGTTTGGCTGGCGCGAAGTGTGGATCGGTTATGACCCGGCG 3362 Score = 192 bits (212), Expect = 1e-44 Identities = 482/717 (67%), Gaps = 24/717 (3%) Strand=Plus/Plus Query 729 GATGTTTTCGGCCAC-GCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 787 ||||||||| ||| || || ||||| | |||| || ||||| ||||| ||||| | Sbjct 112 GATGTTTTCCACCAGTGCTGC-GCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAACGG 170 Query 788 ATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTGCGCCGGCGCGCGC 847 |||| |||| || || ||||| |||| ||| || | | || || ||||| | | Sbjct 171 ATTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAACCGAACGGCGGCGGGTGT 230 Query 848 CTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGGGA 907 | ||||| |||| || ||||| || ||| |||| || |||||| | ||||| Sbjct 231 CCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCGGGA 290 Query 908 AGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGG 967 |||||||| | ||||||||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 291 AGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATATCGG 350 Query 968 CCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACTTGTCGTGC 1026 | || || || | |||| ||| |||||| | ||||||||||||||| | Sbjct 351 CAGCCAGTTTTTCACTGTTTTCCTG-GTCTTTGTTGACCAGCGGGAAATACTTGTCAGAC 409 Query 1027 AGCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTCCTGG--AACCACGGGTCGA 1084 |||||||| || || || ||| | || || | || |||||| ||||| ||||| Sbjct 410 AGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCAC--GTCGA 467 Query 1085 TCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGC 1144 | | | ||| ||||||||| | ||||| ||||| | || || || | || | Sbjct 468 TAAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGCATATTCTCCACCTTTCC 527 Query 1145 CGACGAGCACC-TTGCCGGCCTGCTT----CGCGCCT--TCGTGCAGC-----ACGCGCT 1192 |||| |||| |||| || || ||| | | | |||| || ||| | | Sbjct 528 CGACTTTCACCGCACCCGGTGTGGTTTCACCGCCCGTGGTGGTGCTGCCCATGACGTGAT 587 Query 1193 GTGCCGCGCGCTCGCGGTACTGTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGGGT 1252 | || ||| ||| | |||||||| || ||||||| ||||||| |||||||| Sbjct 588 CCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGCAGCAGCGGGT 647 Query 1253 TTGCCTGACGGTCAGTCGTCGCGGCCGCCTTCACGCCGTTCCAGCCGATCATGATGCGAT 1312 || | ||||| || || || |||||||||||| |||||||||||||||| | Sbjct 648 TTTCGCTACGGTTAGAGGTTTTCGCACGCTTCACGCCGTTAAAGCCGATCATGATGCGGT 707 Query 1313 CGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGTTGGAAGT-CGGCGAACTTC 1371 | |||||| | || | ||| ||| ||||| ||| | ||||| | | | ||| | Sbjct 708 CCAGCGCCTGACGTTTCACGATGGCGTTACGGATACGCAGCTGGAAATCCTGATAAC-GC 766 Query 1372 GCCCATGCGTCGAGCTT-GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCA 1427 ||||| ||| ||||| ||| || | | | |||| || ||| ||||| ||||| Sbjct 767 GCCCACAGGTCCAGCTTCGCG-TAGGTCAGCACCGTATCAAAGTTGGTCTGTTCGCA 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114248803608882