Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq220 257 4e-64 >seq220 Length=3625 Score = 257 bits (284), Expect = 4e-64 Identities = 486/712 (68%), Gaps = 5/712 (1%) Strand=Plus/Plus Query 3243 CGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAG 3302 |||| |||||| | ||||| || || |||||||| ||||| | ||||| || || || Sbjct 2592 CGCATCCGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAA 2651 Query 3303 GCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCT 3362 || || | |||||||| |||| ||||| || || ||||| || || || ||||| Sbjct 2652 GCCCTGATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCA 2711 Query 3363 CAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGCGGCGGCCGACATCGAG 3422 ||||| ||||| || ||||||||||||| | ||||| | | | ||| | ||| Sbjct 2712 CAGGCTCACGTTTTTAAGCAGTACATCATCGACTTCGC---CAAAGAAGTCGAGGTGGAG 2768 Query 3423 CTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAAC 3482 || | ||||||||||| | | || | ||| || ||||| |||||||| || || || Sbjct 2769 CTGAAAGGCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTACTTCCTCGGCACCAAT 2828 Query 3483 GCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCG 3542 || |||||||| ||| ||| |||||| | || | || || || || ||| | ||| Sbjct 2829 GCCCGCACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGATACCG 2888 Query 3543 AAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAG 3602 || |||| || ||| ||| || || ||||| ||||| || ||||| ||||| | Sbjct 2889 AAATTCCAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGCGACAA 2948 Query 3603 ACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCG 3662 || || || |||||| |||||| | || ||| || || |||||||| ||| ||| Sbjct 2949 ACCTATTTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTGCG 3008 Query 3663 CACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCG 3722 | ||||| || ||| | | ||| | | |||||| | |||| Sbjct 3009 CTGTTCAACCGTGGGCGCAACAAAGCCGATAAGGTGGACATCGACCTGTCCCACAGCAAT 3068 Query 3723 CTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGAT 3782 || | | |||| || |||||| |||| ||| | || ||||| || |||||| ||| Sbjct 3069 CTGGCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGAT 3128 Query 3783 GCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCC 3842 || || ||||| || |||| |||||| | ||| || ||||| ||||||||| | Sbjct 3129 GCAGTGCGCGGCGGATGTAACCTTTTCGACCTTGACCAGTTGCGCATGGAGTACAGCCCG 3188 Query 3843 GAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGAT-TCGCTGTCGGTGTTCAA 3901 | |||| | ||| ||||| |||||| |||| | |||||| |||| ||| || ||| Sbjct 3189 GCCGAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGC-GTCCGTATTCCC 3247 Query 3902 GCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3953 ||| || ||||| |||||||| ||| ||||||| ||| | ||| Sbjct 3248 GCTCAGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGAC 3299 Score = 212 bits (234), Expect = 1e-50 Identities = 490/720 (68%), Gaps = 30/720 (4%) Strand=Plus/Plus Query 784 GATGTTTTCGGCCAC-GCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 842 ||||||||| ||| || || ||| | | |||| || ||||| ||||| ||||| | Sbjct 112 GATGTTTTCCACCAGTGCTGC-GCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAACGG 170 Query 843 ATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTGCGCCGGCGCGCGC 902 |||| |||| || || ||||| |||| ||| || | | || || ||||| | | Sbjct 171 ATTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAACCGAACGGCGGCGGGTGT 230 Query 903 CTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGGGA 962 | ||||| |||| || ||||| || ||| |||| || |||||| | ||||| Sbjct 231 CCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCGGGA 290 Query 963 AGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGG 1022 |||||||| | ||||||||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 291 AGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATATCGG 350 Query 1023 CCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACTTGTCGTGC 1081 | || || || | |||| ||| |||||| | ||||||||||||||| | Sbjct 351 CAGCCAGTTTTTCACTGTTTTCCTG-GTCTTTGTTGACCAGCGGGAAATACTTGTCAGAC 409 Query 1082 AGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGG--AACCACGGGTCGA 1139 |||||||| || || || ||||| || || | || |||||| ||||| ||||| Sbjct 410 AGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCAC--GTCGA 467 Query 1140 TCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGC 1199 | | | ||| ||||||||| | ||||| ||||| | || || || | || | Sbjct 468 TAAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGCATATTCTCCACCTTTCC 527 Query 1200 CGATGAGCACC-TTGCCGGCCTGCTT----CGCGCCT--TCGTGCAGC-----ACGCGCT 1247 ||| |||| |||| || || ||| | | | |||| || ||| | | Sbjct 528 CGACTTTCACCGCACCCGGTGTGGTTTCACCGCCCGTGGTGGTGCTGCCCATGACGTGAT 587 Query 1248 GCGCTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGT 1307 || ||| ||| ||| | ||||||||||| ||||||| ||||||| |||||||| Sbjct 588 CCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGCAGCAGCGGGT 647 Query 1308 TTGCCTGACGGT---CGGTCGTCGCGGCCGCCTTCACGCCGTTCCAGCCGATCATGATGC 1364 || | ||||| ||| |||| || |||||||||||| ||||||||||||||| Sbjct 648 TTTCGCTACGGTTAGAGGTTTTCGC--ACG-CTTCACGCCGTTAAAGCCGATCATGATGC 704 Query 1365 GATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGT-CGGCGAAC 1423 | || |||||| | || | ||| ||| ||||| ||| ||||||| | | | ||| Sbjct 705 GGTCCAGCGCCTGACGTTTCACGATGGCGTTACGGATACGCAGCTGGAAATCCTGATAAC 764 Query 1424 TTCGCCCACATGTCGAGCTT-GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCA 1482 |||||||| ||| ||||| ||| || | | | |||| || ||| ||||| ||||| Sbjct 765 -GCGCCCACAGGTCCAGCTTCGCG-TAGGTCAGCACCGTATCAAAGTTGGTCTGTTCGCA 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117285582440488