Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=5851329 Score = 113 bits (124), Expect = 4e-20 Identities = 268/402 (67%), Gaps = 10/402 (2%) Strand=Plus/Minus Query 20187 TTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAA 20246 |||| || || || ||||| || | ||||||| ||| || || | | | | ||| || Sbjct 5221961 TTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAA 5221902 Query 20247 CATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAAC 20306 | |||| ||| | || | || || || ||||||||||| ||||||||||||| Sbjct 5221901 TTTTTGCAATCATGTGGGTCATAAGTGAGTATGAAGCAATGTTAAATGGAACTCCCAAAC 5221842 Query 20307 CCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATT 20366 | | || || | ||||||| ||||| | ||| || || |||||||||| Sbjct 5221841 CGACATCACCACTGCGTTGATACAAATGACAACTTAACTCTCCATCTTGAACATAAAATT 5221782 Query 20367 GACATAACAAGTG----ACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCA 20421 || ||||||| ||| || || | |||| |||| || | || ||||| Sbjct 5221781 GA----ACAAGTGTATGACATGGAGGTAAAACCATTTTAT-CAAGATCAGATGGATTCCA 5221727 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGA 20481 ||| | | || |||||||| || || ||||||||| ||| | || | | Sbjct 5221726 AGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTTTTTATTTGATCAATAACATCTGC 5221667 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 | ||| |||| || | ||||||||||| ||||| | || | || | || ||||| Sbjct 5221666 TAGTTGATCAATTCCTTTTCCTGTATAGTCGGCATCAACTCCCTCATATTCAGCACCAAA 5221607 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 || ||||| |||||||||||||||||||| ||||| || || Sbjct 5221606 ATGTCTCCATTGGAAACCGTAAACAGGTCCTAAATCACCTTC 5221565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441369561427080