Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq220 544 2e-150 >seq220 Length=3625 Score = 544 bits (602), Expect = 2e-150 Identities = 850/1203 (71%), Gaps = 27/1203 (2%) Strand=Plus/Minus Query 4525 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAG 4584 ||||| || |||| |||||| || ||| ||||| || | || | | | ||| Sbjct 3358 GGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGAGCCAGTGCATGAAAG 3299 Query 4585 TCTTCCCATACCTCCCAACTGTCCACCATCCCGCGCATG-AGCATCGC-GAGCGGAAACA 4642 || ||| || ||||| ||||||||||| | ||| || ||| |||| |||||| || | Sbjct 3298 TCGGTCCAGACTTCCCAGCTGTCCACCATGCA-CGCCTGCAGC-TCGCTGAGCGGGAATA 3241 Query 4643 CCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTGT 4702 | |||||| ||||| | || ||||||| |||||||| | | ||| ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 4703 ACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTCCA 4762 |||||| ||||| |||||| |||||||| ||||| || |||||||| | ||||| |||| Sbjct 3180 ACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTTCCA 3121 Query 4763 CCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGT 4822 | || || || ||||| | || ||||| ||||| ||| |||| | || | || Sbjct 3120 CGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGCTGT 3061 Query 4823 GGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGC---CGCGGTTGAACAGTGCGC 4879 || |||||||| | | || | | | ||| |||| | ||||||||||| || | Sbjct 3060 GGGACAGGTCGATGTCCACCTTATCGGCTTTG---TTGCGCCCACGGTTGAACAGCGCAC 3004 Query 4880 CGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGAC 4939 |||||||||||||||| || || | || |||||| |||||||| || ||||| || | Sbjct 3003 CGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTTGTC 2944 Query 4940 GCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCA 4999 |||| | ||||| || ||||| ||||| || || ||||||||||||||||| ||| | Sbjct 2943 GCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTCGGTA 2884 Query 5000 CCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCG 5059 |||||| || ||||| | ||||| |||||| || ||| ||||||||||| || | Sbjct 2883 TCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGCATTGG 2824 Query 5060 TGCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCTCGA 5119 ||||||| ||||| |||||||| ||||| || ||||||||||||||||| |||||||| | Sbjct 2823 TGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGCACCATCGGATCGCCTTTCAGCTCCA 2764 Query 5120 TCCCGGCCGCGTCCTTGGCGAACTGGATGATGTATTGCTTGAAGACGTGCGCCTGCGCCT 5179 | || | || |||||||| | ||||||||| ||||| || ||||| ||||| |||| Sbjct 2763 CCTCG---ACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTGTGCCT 2707 Query 5180 TGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCCTCGC 5239 | ||||| || |||||||||||||| || ||||| ||| ||||| || | || || | Sbjct 2706 TACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGCTTCAC 2647 Query 5240 GTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGA 5299 | || ||||| | |||||||||||||| || ||| ||||||||||||||||| | | Sbjct 2646 GGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCGGTTGG 2587 Query 5300 CCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGAA---GGCCT 5356 | || || || ||||| ||||||||| | |||||| ||| |||| | | Sbjct 2586 TTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGAACATGGAGGAATGGAAAATCTCTT 2527 Query 5357 CCAGGAGCTGCGTCTGTTCCTCGGGACTGATCGCATTGCGCTCGGGCTTGCTGCGCGGCC 5416 |||| || ||||||| |||| ||| |||| || || | | |||||| | Sbjct 2526 CCAGCTTCTCAATCTGTTCATCGG---TGAAGACATTCTTTTCCGGTTGACGGCGCGGGC 2470 Query 5417 CCTTGTTGCGGTTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCTGGCCTCGT--- 5473 | ||||||||||| || || || ||||| | ||||| ||||||||||| | | || Sbjct 2469 CTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCGC---CATTGTTAA 2413 Query 5474 ACCGGCGCACGCGCGCCATGCGCTCCATTTGTCGGCCAAGCAGGTCGATTTCCTTGTAGT 5533 || || | ||||| ||||||| || || | |||||||| ||||| ||| | | Sbjct 2412 ACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGAAAT 2353 Query 5534 CCCGGCCTTCCTTCACCTCCTTGGCGACGAGCTGCGCCAT-GCGCTCTTCGATGCTGTTC 5592 | ||||| || |||||| | |||||| || || ||| | || || || | Sbjct 2352 CTTTCCCTTCTTTGTGCTCCTTCATAATGAGCTG-GCAATAGCGTGCGGCGGTGGTGAGC 2294 Query 5593 GCCACGCGCTCCACTGCATCCGCCGCGTCCCACCCATCGCGCCGCTTCCAGCTGTGCACC 5652 || | |||| | | | ||||| ||||| ||||||||||| || Sbjct 2293 TGCATCTGATCCAGCGGCCCATAATCACCCCACTTGTCGCGTTTTTTCCAGCTGTGAACA 2234 Query 5653 GTCACGGGCTTCACACCCAGCATTTCCGCGATGCGTGCGACCCAATAGCCCTGCCAGTAC 5712 || | ||| | ||||||||||| || ||||| || || | || ||||| ||||| Sbjct 2233 GTTGCAACTTTCTCGCCCAGCATTTCAGCAATGCGGGCTACGCGGTATCCCTGAAAGTAC 2174 Query 5713 AGC 5715 ||| Sbjct 2173 AGC 2171 Score = 284 bits (314), Expect = 3e-72 Identities = 641/941 (68%), Gaps = 37/941 (4%) Strand=Plus/Minus Query 6902 AAGTTCAGCGTCGCGCCGAGCGTCCAGCAGAAGCTGGA-GACCAAGGTTCAGGAGTCGAG 6960 ||||||| || | |||| || ||||||| |||||| ||||| | | ||| |||| Sbjct 1038 AAGTTCACTGTAGAGCCGTCTGTGCAGCAGACGCTGGAAGACCA-GATCCAGCAGTCCGC 980 Query 6961 CGACTTCCTGAAAAGCATCAACTTCTACGGC-GTGCCCGAACAGGAAGGCGAAAAGATCG 7019 || ||||||| || ||| || ||| | ||| | || ||| || | | | | Sbjct 979 CGCTTTCCTGACGCTGATTAACGTC-ACGCCAGTGACTGAGCAGTCCGGTCAGCTGCTGG 921 Query 7020 GCCTGGGCGTGTCCGGCCCGGTGGCAAGCACCACCGACACCACCCAGCAGGACCGGGAGA 7079 | ||||| || | || | | || | ||||| ||||||||| | | || || || | Sbjct 920 GGCTGGGGGTTGGCAGCACCATTGCCGGAACCACTGACACCACCGCGAAAGAGCGTGA-A 862 Query 7080 CCTCCGACATTTCGACGATGGACGGTCGCCGT----TATCGTTGCGAGCAGACCAACTCG 7135 ||| | | | ||||| || | ||||| || || ||||| |||||||||| Sbjct 861 CCT--GTCGATCCGACGCTG-ATGGTCGATGTGGAATACAAATGCGAACAGACCAACTTT 805 Query 7136 GACACGCACATCACCTACCAGAAGCTGGACGCTTGGGCGAAGTTCGCCG-ACTTCCAGAC 7194 || ||| | |||||| |||||||||| |||||| ||| | | | |||||| Sbjct 804 GATACGGTGCTGACCTACGCGAAGCTGGACCTGTGGGCGC-GTTATCAGGATTTCCAGCT 746 Query 7195 TCGCATCCGCGACGCCATCATCAAGCGCCAGGCGCTGGACCGCATCATGATCGGCTTCAA 7254 || ||||| |||||||| | || || ||||||||||||||||||||||||||||| || Sbjct 745 GCGTATCCGTAACGCCATCGTGAAACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAA 686 Query 7255 CGGTGTGAGCCGTGCCGCTACGTCGGACCGGGTGGCCAACCCGATGCTGCAGGACGTGAA 7314 ||| |||| ||||| || || |||| | |||||| |||||||||| ||||| Sbjct 685 CGGCGTGAAGCGTGCGAAAACCTCTAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAA 626 Query 7315 CAAGGGCTGGCTGCAGAACCTGCGTGAGCAGGCGCCGCAGAGGGTGATGAAGGAAGGCAA 7374 ||| |||||||||||||| | |||||| | || ||| | || ||| || || || Sbjct 625 CAAAGGCTGGCTGCAGAAAATCCGTGAGGATGCACCGGATCACGTCATG--GGCAG-CAC 569 Query 7375 GGCGGCCGCCGGCAAGATCACT----GT-CGGTGGCGCT-------GGCGCGGACTATGG 7422 | | | ||| | | ||| || ||||| | || | || |||| Sbjct 568 CACCACGGGCGGTGAAACCACACCGGGTGCGGTGAAAGTCGGGAAAGGTGGAGAATATGC 509 Query 7423 AAACCTGGACGCCCTGGTGTACGACATCACGAATCACCTGGTCGAGCCGTGGT--ACGCA 7480 |||||||||||| ||||| || | ||| | || |||| |||||| || Sbjct 508 CAACCTGGACGCCGTGGTGATGGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAG 451 Query 7481 GAGGATCCGGATCTGGTCGTTGTGTGCGGTCGCAACCTGCTGTCCGACAAATACTTCCCG 7540 || ||| |||||||| || | || ||||| | |||||||| ||||| || |||||| Sbjct 450 GACGATGACGATCTGGTGGTGATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCG 391 Query 7541 CTGGTGAACAGGGACCGCGACC-CGGTCCAGCAGATCGCGGCCGACCTCATCATCAGCCA 7599 ||||| |||| |||| || | || | | | || ||||| | |||||||| || Sbjct 390 CTGGTCAACAAAGACCAGGAAAACAGTGAAAAAC-TGGCTGCCGATATGATCATCAGTCA 332 Query 7600 GAAGCGCATCGGCAACCTGCCGGCCATCCGCGTGCCGTACTTCCCGGCGAATGGCCTGCT 7659 ||| ||||| || ||||| |||| | || | ||||| ||||||| |||||| ||||| Sbjct 331 GAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCT 272 Query 7660 GGTGACGCGCCTGGACAACCTGTCCATTTACTACCAGGAGGGCGGGCGCCGTCGCACGAT 7719 | | || || ||||| |||||||||||||||| ||||||| | ||||| || || | Sbjct 271 GATCACCCGTCTGGATAACCTGTCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGT 212 Query 7720 CCTGGACAACGCGAAGCGCGATCGCATCGAAAACTACGAGTCGAGCAACGACGCGTACGT 7779 | |||||| |||| || || || || ||||||| || || ||||| || || || Sbjct 211 TATCGACAACCCGAAACGTGACCGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGT 152 Query 7780 GATCGAAGACCTGGCG-TGCGCGGCCATGGCCGAAAACATC 7819 | | || || || || ||||| || ||| ||||||||| Sbjct 151 GGTTGAGGA-CTACCGCTGCGCAGCACTGGTGGAAAACATC 112 Score = 105 bits (116), Expect = 2e-18 Identities = 295/448 (66%), Gaps = 21/448 (5%) Strand=Plus/Minus Query 5958 GAAGGCGCAACGAGCGACGGCCGCGTGATCGACCGCGAAACGCTGGTCGAGATGGCAACC 6017 ||||| || || | |||||| |||| ||| | || ||| ||||| |||||||| || Sbjct 1939 GAAGGTGCCACTACCGACGGACGCGAAATCCAGCGTGAATGGCTGGAACAGATGGCAGCC 1880 Query 6018 AACTATGACCCCAAGGTCTACACCGCGCGCGTCAACCTTGAGCACATCCGAGGCT-ACGA 6076 | ||| |||| ||| || ||||||| | ||||||||||||||| || || | Sbjct 1879 AGCTACAACCCGGCGGTGTATACCGCGCTGATTAACCTTGAGCACATCA-AGTCTTATCT 1821 Query 6077 CCCGACCGGCCCGTTCAAAGCCTACGGCGACGTGACAGCACTG-------AAGA-----C 6124 ||| | || | || || ||||||| | ||||| || ||| |||| | Sbjct 1820 GCCGGACAGCACCTTTAACCGCTACGGCAAAGTGACGGCGCTGTTTGCTGAAGAAATCAC 1761 Query 6125 CGAAGA---GCAGGACGGCAAGATGCGCCTGCTCGCGCAGATCGATCCCACGGACGACCT 6181 |||| || || ||||||||| ||| || | | || || ||||| | | Sbjct 1760 GGAAGGTCCGCTGGCAGGCAAGATGGCGCTGTATGCCGACGTTGAGCCAACGGAGTCCTT 1701 Query 6182 GGTCGCCATGACCAAGGCTCGCCAGAAAATCTTTGCCTCTATGGAGTTGAACCCGAGCTT 6241 ||| | || || |||||||| | || |||||||||| | | ||||| || Sbjct 1700 GGTGGAACTGGTGAAAAAAGGCCAGAAATTATTCACCTCTATGGAAGTCAGCCCGAAGTT 1641 Query 6242 CGCCGACACCGGCGAGGCCTACCTGGTCGGCCTCGCCGTGACCGACAACCCGGCAAGCCT 6301 ||| || || ||| | ||||||||||| ||||| || | || || | || || || || Sbjct 1640 CGCTGATACGGGCAAAGCCTACCTGGTTGGCCTGGCTGCCACTGATGATCCTGCCAGTCT 1581 Query 6302 GGGATGCGAAGTCCTGCAGTTCAGTGCCAAGGCCAAGACC--AACCCGCTCGCCGCACGC 6359 ||| ||| | ||| ||||| |||| || || || |||||||| || ||| Sbjct 1580 GGGTACGGAAATGCTGACATTCAGCGCCAGTGC--AGCCCATAACCCGCTGGCAAACCGC 1523 Query 6360 AAGCAGAACCCGGACAACCTGTTCACCG 6387 |||||||| || | ||| || || |||| Sbjct 1522 AAGCAGAATCCCGCCAATCTTTTTACCG 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123909536267068