Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 185 2e-41 seq4 113 1e-19 >seq1 Length=5851329 Score = 185 bits (204), Expect = 2e-41 Identities = 277/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 72409 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 72468 || ||| ||||| ||| | ||||| | ||||||||||| |||||||| ||||| | | Sbjct 4802391 GATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCTCAAAAAG 4802332 Query 72469 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 72528 | | || || || ||||| ||||| || || | || ||||| |||||||||||||||| Sbjct 4802331 AGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 4802272 Query 72529 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 72588 | |||||||| ||||| | ||| || | || ||||| |||| ||||||| Sbjct 4802271 TAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTCAATC 4802212 Query 72589 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 72648 | || || | ||||| || | || || || | ||||| || | || || || | Sbjct 4802211 ATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 4802152 Query 72649 ATATTTTCAATGGTGTCGAAAAATGCATGTAT--CTCGGTAATATAGATGCCAAAAGAGA 72706 | || | ||||| || || ||| ||| || |||||| | ||||||||| | || Sbjct 4802151 AAATCAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCCAAACGTGA 4802094 Query 72707 TTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCC 72766 |||||| |||||||||| || || ||||| |||||| || || ||||| ||| || Sbjct 4802093 TTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAACC 4802034 Query 72767 GGATGACTATGTGATTGCAACAGGGAAAAC 72796 ||||||| ||| ||||| ||||| ||||| Sbjct 4802033 AGATGACTTTGTTATTGCTACAGGTAAAAC 4802004 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || ||||| ||||| ||||||||||||||| || |||||||| ||| Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | || ||||| || ||||| ||||| || || ||| Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 288454 GTCTTGACGAATATCTGCATTATGTTATTCTAATATTTTTAATAATGTA 288502 ||||| ||||| || ||||| || ||||| | ||||||||| || Sbjct 5400325 GTCTTAACGAAAATTTGCAT----TTCGTCTAAAA--TTTAATAATATA 5400283 >seq4 Length=2360143 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | |||| || ||||||||||| || || || | Sbjct 1036607 CCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAA 1036548 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | ||||||||| |||||||||| | ||||| |||| Sbjct 1036547 AGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 1036488 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| || || || | || || || || || | ||| | ||||| Sbjct 1036487 ATTCCTTCCTTATCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACC 1036428 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| |||||||||||| |||||||| Sbjct 1036427 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| |||||||| |||| || || | ||| || || | ||||||||| |||||| Sbjct 1036115 TCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAG 1036056 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||||| |||||||||||| || || || || || | || ||||| Sbjct 1036055 ATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTG 1035996 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||||| || || ||||| || || || |||| |||||||||| Sbjct 1035995 TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACG 1035936 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1035935 AAGATCTGCAT 1035925 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || |||| || || | ||| || || | ||||||||| |||||| Sbjct 1035887 TCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAG 1035828 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||||| ||||||||| || || || || || || | || ||||| Sbjct 1035827 ATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTG 1035768 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||||| || || ||||| || || || |||| |||||| || Sbjct 1035767 TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACA 1035708 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1035707 AAAATCTGCAT 1035697 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | |||| || ||||||||||| || || || | Sbjct 1036835 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAA 1036776 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | ||||||||| |||||||| | | ||||| |||| Sbjct 1036775 AGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGG 1036716 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || || || | || ||||| || || | ||| | ||||| Sbjct 1036715 ATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACC 1036656 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||| || |||||||| Sbjct 1036655 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645527892986