Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 185 2e-41 seq16 89.7 1e-12 >seq1 Length=5851329 Score = 185 bits (204), Expect = 2e-41 Identities = 277/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 68398 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 68457 || ||| ||||| ||| | ||||| | ||||||||||| |||||||| ||||| | | Sbjct 4802391 GATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCTCAAAAAG 4802332 Query 68458 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 68517 | | || || || ||||| ||||| || || | || ||||| |||||||||||||||| Sbjct 4802331 AGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 4802272 Query 68518 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 68577 | |||||||| ||||| | ||| || | || ||||| |||| ||||||| Sbjct 4802271 TAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTCAATC 4802212 Query 68578 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 68637 | || || | ||||| || | || || || | ||||| || | || || || | Sbjct 4802211 ATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 4802152 Query 68638 ATATTTTCAATGGTGTCGAAAAATGCATGTAT--CTCGGTAATATAGATGCCAAAAGAGA 68695 | || | ||||| || || ||| ||| || |||||| | ||||||||| | || Sbjct 4802151 AAATCAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCCAAACGTGA 4802094 Query 68696 TTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCC 68755 |||||| |||||||||| || || ||||| |||||| || || ||||| ||| || Sbjct 4802093 TTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAACC 4802034 Query 68756 GGATGACTATGTGATTGCAACAGGGAAAAC 68785 ||||||| ||| ||||| ||||| ||||| Sbjct 4802033 AGATGACTTTGTTATTGCTACAGGTAAAAC 4802004 Score = 100 bits (110), Expect = 6e-16 Identities = 341/524 (65%), Gaps = 8/524 (2%) Strand=Plus/Plus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312 |||||| || |||| || ||||| |||| | || ||||| || | |||||| || Sbjct 3117944 TGGATTATAGTTAGGTATTTTAGTACTCCAAGCTGTGCCGATACCTTCAGCACCATTGAC 3118003 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || || | ||||| | ||| ||| | |||||||| || || | | || ||| | Sbjct 3118004 CAAAACCATGGGAATGATAGGACAATACCATTCTGGTTCAATTTTTTGATTTTCTTCAAA 3118063 Query 297373 CAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAG 297432 || || | |||| ||| || || | |||||| | | ||| |||| | || Sbjct 3118064 CAAGAATCTGAGAACATTCTCATCATCTTGGACGAATAGAGTTTTAGTTACAGGGCTTAG 3118123 Query 297433 TTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAA 297492 || |||||||||||| || | | || ||| ||||| || || | ||| | ||| || Sbjct 3118124 TTGTGTGAAAATATAACGAGGAGAGGCAGAATCTTTACCTCCTTGAAGTCTAGTACCAAA 3118183 Query 297493 CTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTT 297552 || || |||||||| |||| || ||||| ||| ||||||||||| || | || Sbjct 3118184 TTGACCAATGGGCAACAATAAGTTAATATTATTTGATCCAACATAATCCTGAGCTAAATT 3118243 Query 297553 CACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAAC-G 297610 | || ||| || |||| ||| |||||||| || || | || ||| |||| | Sbjct 3118244 GATAATAGTCATCATCAAAGATTGTTCACCATGGTGGTAAGCAGACAT-CTCGCCAACAG 3118302 Query 297611 TAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAAT 297668 |||| || || ||||| || || || || | | || |||| | ||||| Sbjct 3118303 CTCCCGC-CAATTGAGCAACTTTAACTTCCTTCTTATCAGCACGTCTGAAGCATGTGAAT 3118361 Query 297669 ATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCA 297728 | | ||||| || ||| ||||| ||||||||||| | | |||||| || ||| Sbjct 3118362 AAA--ACTTTACGCTGACCTGGTTTCAAACCATCAACAAGACAAGGAATGGATCTTTCGT 3118419 Query 297729 GATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG 297772 ||| ||||| | ||| | ||| |||| ||| || ||| Sbjct 3118420 TATCCATATTTGAGAAGAGAATCAATTCTTTGTTGATAAATTCG 3118463 >seq16 Length=715404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 342/527 (65%), Gaps = 14/527 (3%) Strand=Plus/Plus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312 |||||| || |||| || || || |||| | |||||||| || | |||||| || Sbjct 672766 TGGATTATAGTTAGGTATTTTGGTACTCCAAGCTGTACCGATACCTTCAGCACCATTAAC 672825 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || ||| | ||||||| ||| ||| | |||||||| || || | || ||| | Sbjct 672826 CAAAATCATAGGAATAATAGGACAATACCATTCTGGTTCAATTTTTTGGTTTTCTTCAAA 672885 Query 297373 CAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACC--TGTCG-AGTCTGAGGGTT 297429 || || | |||| ||| || || ||| || || | ||| ||| ||| || Sbjct 672886 CAAGAATCTGAGAACATTCTCATC---ATCTGGGACAAACAATGTTTTAGTTACAGGATT 672942 Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 | | |||||||||||| || | || ||| ||||| || || | ||| | ||| Sbjct 672943 TAACTGTGTGAAAATATAACGAGGCGAAGCAGAATCTTTACCTCCTTGAAGTCTAGTACC 673002 Query 297490 GAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 || || || |||||||| |||| || ||||| ||| ||||||||||| || | Sbjct 673003 AAATTGACCAATGGGCAACAATAAGTTAATATTATTTGATCCAACATAATCCTGAGCTAA 673062 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAA 297608 || | || ||| || |||| ||| |||||||| || || | || ||| ||| Sbjct 673063 ATTGATAATAGTCATCATCAAAGATTGTTCACCATGGTGGTAAGCAGACAT-CTCGCCAA 673121 Query 297609 C-GTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGCTG 297665 | | |||| || || ||||| || || || || | | || |||| | || Sbjct 673122 CAGCTCCCGC-CAATTGAGCAACTTTAACTTCCTTCTTATCAGCACGTCTGAAGCATGTG 673180 Query 297666 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 297725 |||| | ||||| |||||| ||||| ||||||||||| | | ||||| || || Sbjct 673181 AATAAA--ACTTTACGTTGACCTGGTTTCAAACCATCAACAAGACAAGGAATAGATCTTT 673238 Query 297726 CCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG 297772 | ||| ||||| | ||| | ||| |||| |||||| ||| Sbjct 673239 CATTATCCATGTTTGAGAAGAGAATCAATTCTTTGTTGATGAATTCG 673285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102871705308450