Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq4 100 3e-16 >seq1 Length=5851329 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| ||||| || ||||| || ||||| ||||||||||| || || || | Sbjct 5040689 CCGGCAAAAATAAGCCGTTGTTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 5040630 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || || ||||| ||| || || || | ||||| || || || || ||| Sbjct 5040629 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 5040570 Query 64424 GTTTTTACGAAAATTTGCAT 64443 |||||||||||||||||||| Sbjct 5040569 GTTTTTACGAAAATTTGCAT 5040550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 216/317 (68%), Gaps = 11/317 (3%) Strand=Plus/Minus Query 154794 CGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGAC 154853 || ||||| | ||||||||| | || ||||| ||||| || || | || | | Sbjct 2654467 CGCTTTTCATTTTCATATTGTACATAAAGTTTATCAAAATCATCACCAAA-ACAATCACC 2654409 Query 154854 AA-ACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGT--ACGCGT 154910 || ||| ||||| | |||||||| || ||||| || | | | | | | || ||| Sbjct 2654408 AAGACCCGGACATTCATTAGGACACATTAACGACCA-ATCT-GAATCGCTTTCAACACGT 2654351 Query 154911 TTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCA 154970 |||||||| ||||| || ||||| | |||| || ||||||||||| ||| ||||| Sbjct 2654350 TTCATAAATAAATCTGGAACCCAAAGTCCGTAAAATAAATCACGCGCTCTTTCTTCTTCT 2654291 Query 154971 GCGCCCATGTTTCGCTTTAAATTCAAAAAATCATAT-ATGTCGGCGTGCCACGGCTCTAA 155029 | || ||||| ||| || |||| |||| || || || || ||||| ||||| || Sbjct 2654290 GGTCCTGTGTTT-TTTTTTAACTCAAGAAATTGGATAATATCCGCATGCCATGGCTCCAA 2654232 Query 155030 ATATACGGCCATCGCGCC---TTTGCGTTTTCCTCCTTGATCCACGTGACGCACACAATT 155086 ||||| || | ||||| | | || || ||||| || || | ||| ||| | | Sbjct 2654231 ATATATAGCAAATGCGCCAGGTCTTTTATTACCACCTTGGTCAACATAACGAACAGTACT 2654172 Query 155087 ATTGTACACGCGCAACA 155103 |||||| || || |||| Sbjct 2654171 ATTGTAAACACGTAACA 2654155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| || || || ||||| || || ||||||||||| ||||| ||||| Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| || | ||||| | || ||||| | ||| | ||||| || || | | Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 64424 GTTTTTACGAAAATTTGCATTT 64445 || || |||||||||||||||| Sbjct 5400325 GTCTTAACGAAAATTTGCATTT 5400304 >seq4 Length=2360143 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| |||| || || |||||||| ||||||||||| | | || | | || Sbjct 1036593 AAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 1036534 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| || || ||||| | || | | || ||||| || || |||||||| || || Sbjct 1036533 CTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATC 1036474 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||| ||| || | ||||||| | || || || | ||| | ||| Sbjct 1036473 TTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGT 1036414 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| || ||||| || ||||| Sbjct 1036413 TTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || |||||||| ||||||||||| | | || | | || ||||| || Sbjct 1035899 TGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCAAGTTGT 1035840 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | | || ||||| || || ||||| || || ||||| || ||| Sbjct 1035839 TTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTT 1035780 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||||| | || || || | ||| | ||| ||||| ||| Sbjct 1035779 GACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTC 1035720 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| ||||| Sbjct 1035719 AAAGTCTTAACAAAAATCTGCAT 1035697 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || |||||||| ||||||||||| | | || | | || ||||| || Sbjct 1036811 TGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAAGTTGT 1036752 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | | || ||||| || || ||||| || || ||||| || ||| Sbjct 1036751 TTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTT 1036692 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||||| | || || || | ||| | ||| ||||| ||| Sbjct 1036691 GACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTC 1036632 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| ||||| Sbjct 1036631 AAAGTCTTGACAAAAATCTGCAT 1036609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641133856280