Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 >seq4 Length=2360143 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || |||||||| |||||||||||| ||| |||| | || || Sbjct 1035906 AACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTC 1035847 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | ||||| | |||||||| ||| ||||| |||||||| Sbjct 1035846 AAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035787 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | ||||| || | || |||||||| Sbjct 1035786 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035727 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || |||||||| |||||| Sbjct 1035726 GCCTGTCAAAGTCTTAACAAAAATCTGCATA 1035696 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| |||||||| || |||||||| ||||||||||| ||| |||| | || || Sbjct 1036590 AACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTC 1036531 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | ||||| | |||||||| ||| ||||||||||| || Sbjct 1036530 AAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTG 1036471 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || ||||| | ||||| || | || |||||||| Sbjct 1036470 AATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036411 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || || || || |||||| Sbjct 1036410 GCCTGTCAAAGTCTTGACGAAGATCTGCATA 1036380 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || |||||||| ||||||||||| ||| |||| | || || Sbjct 1036818 AACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTC 1036759 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | || || | |||||||| ||| ||||| |||||||| Sbjct 1036758 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1036699 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | ||||| || | || |||||||| Sbjct 1036698 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036639 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || |||||||| |||||| Sbjct 1036638 GCCTGTCAAAGTCTTGACAAAAATCTGCATA 1036608 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| || || ||||| ||| |||| | || || Sbjct 1035678 AACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTC 1035619 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | || || | |||||||| ||| ||||| |||||||| Sbjct 1035618 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035559 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | ||||| || | || |||||||| Sbjct 1035558 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035499 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||||||||| Sbjct 1035498 GCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| || || |||||| ||| |||| | || || Sbjct 1036134 AACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTC 1036075 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | || || | |||||||| ||| |||||||||||||| Sbjct 1036074 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTG 1036015 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | ||||| || | || |||||||| Sbjct 1036014 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035955 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || || || || |||||| Sbjct 1035954 GCCTGTCAAAGTCTTGACGAAGATCTGCATA 1035924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389443195295