Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 >seq4 Length=2360143 Score = 105 bits (116), Expect = 6e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||||||||| || ||||||||| | || | ||| || Sbjct 1035905 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCA 1035846 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||| ||| ||||||||| || || || || || || |||||||||| | || Sbjct 1035845 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGT-CTTG 1035787 Query 127025 ATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 | | | || ||||| |||| || | || || | | ||| || || | || | |||| Sbjct 1035786 AATCTTTGACTTGACGTTG-TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTT 1035728 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || |||||||||||||| Sbjct 1035727 TGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 100 bits (110), Expect = 3e-16 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||||||||| ||||| | || | ||| || Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCA 1035618 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| |||| |||| || || || || || || |||||||||| | || Sbjct 1035617 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGT-CTTG 1035559 Query 127025 ATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 | | | || ||||| |||| || | || || | | ||| || || | || | |||| Sbjct 1035558 AATCTTTGACTTGACGTTG-TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTT 1035500 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| |||| ||| || |||||||| ||||||| Sbjct 1035499 TGCCTGTCAAAGTCTTAACAAAAATTTGCATGG 1035467 Score = 100 bits (110), Expect = 3e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||||||||| || |||||||| | || | ||| || Sbjct 1036817 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036758 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| |||| |||| || || || || || || |||||||||| | || Sbjct 1036757 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGT-CTTG 1036699 Query 127025 ATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 | | | || ||||| |||| || | || || | | ||| || || | || | |||| Sbjct 1036698 AATCTTTGACTTGACGTTG-TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTT 1036640 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || |||||||||||||| Sbjct 1036639 TGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||||||||| |||||| | || | ||| || Sbjct 1036133 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036074 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| |||| |||| || || || || || || || ||||||| | || Sbjct 1036073 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGT-CTTG 1036015 Query 127025 ATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 | | | || ||||| |||| || | || || | | ||| || || | || | |||| Sbjct 1036014 AATCTTTGACTTGACGTTG-TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTT 1035956 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || || || |||||||| Sbjct 1035955 TGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||||||||| |||||| | || | ||| || Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036302 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||| ||| |||| |||| || || || || || || ||||| |||| | || Sbjct 1036301 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGT-CTTG 1036243 Query 127025 ATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 | | | || ||||| |||| || | || || | | ||| || || | || | |||| Sbjct 1036242 AATCTTTGACTTGACGTTG-TCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTT 1036184 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || ||||| |||||||| Sbjct 1036183 TGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497311012880