Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 122 8e-23 seq1 89.7 5e-13 >seq4 Length=2360143 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | || || ||||| |||||||| ||||||||||| Sbjct 1035698 ATACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCA 1035639 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||||||| ||| | || |||| ||| ||||| || Sbjct 1035638 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGT 1035579 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || |||||||| ||| |||| || | || | || || |||| ||| Sbjct 1035578 GGGATTCCCTCCTTGTCTTGAATCTTTGACTTGA-CGTTGTCAATTGTATCAGAAGGCTC 1035520 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||||||| || | ||| || |||||||||||||| Sbjct 1035519 TACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| |||||||| |||||||||||| | ||| | ||| || | |||| Sbjct 1036355 TGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAAGTTGT 1036296 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || |||| ||| ||||| || ||||| || ||||| |||||||| ||| Sbjct 1036295 TTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTT 1036236 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || |||| ||| || || ||||| | |||||||| || Sbjct 1036235 GACTTGA-CGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGT 1036177 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| || ||||| Sbjct 1036176 CAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| |||||||| |||||||||||| | ||| | ||| || | |||| Sbjct 1036127 TGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAAGTTGT 1036068 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || |||| ||| ||||| || || || ||||| || |||||||| ||| Sbjct 1036067 TTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTT 1036008 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || |||| ||| || || ||||| | |||||||| || Sbjct 1036007 GACTTGA-CGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGT 1035949 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || ||||| Sbjct 1035948 CAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | |||| || || ||||| || |||||||| || ||||| Sbjct 1036610 ATACCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 1036551 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||||||| ||| | ||||||| ||| ||||| || Sbjct 1036550 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 1036491 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||| ||| |||| || | || || |||| ||| Sbjct 1036490 GGGATTCCTTCCTTATCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCT 1036431 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||||||| || | ||| || || || || ||||| Sbjct 1036430 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 >seq1 Length=5851329 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 ||||| ||||| || || || |||||||| ||||| ||||| ||| | ||| | | Sbjct 5400430 CGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCGATG 5400371 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||||||||| ||||| | || || || || ||||| || || |||||| Sbjct 5400370 GTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTAACGAAAATT 5400311 Query 45336 TGCATCGCGCGACCAATTTAATAATTTAA 45364 ||||| || ||||||||||| ||| Sbjct 5400310 TGCATTTCGTCTAAAATTTAATAATATAA 5400282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999883426520