Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18 244 4e-59 seq2 215 2e-50 seq4 152 2e-31 seq3 114 5e-20 seq1 114 5e-20 seq39 104 9e-17 seq40 95.1 5e-14 seq19 87.8 7e-12 >seq18 Length=667832 Score = 244 bits (270), Expect = 4e-59 Identities = 479/700 (68%), Gaps = 26/700 (4%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || ||||| | ||||| || | ||||| || ||||||||| |||||||| ||| Sbjct 331797 ATCGGTATTGACTTGGGAACTACTTACTCATGCGTTGGTGTTTACAAAAATGGACGTGTT 331856 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG--- 451033 || ||||| || ||||| ||||| || | ||| || |||| || |||||| Sbjct 331857 GAGATTATTGCCAATGATCAAGGTAATCGGATTACACCATCATATGTTGCTTTTACCCAA 331916 Query 451034 GATTCAG---AAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCA 451088 ||||| | || | ||| | || | |||| ||| |||| | | ||| ||| | Sbjct 331917 GATTCTGGTGAACGTCTTATTGGTGATTCTGCCAAAAATCAAC--TTACTTCCAATCCAG 331974 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATA---CTG 451145 || ||| | | ||| || |||||||||||||| || | || | |||| ||| Sbjct 331975 CTAATACAATCTTTGACGCCAAACGTTTAATTGG---TAGGGATTACTCAGATAAATCTG 332031 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | ||| || | ||||| | | | | || | ||| |||| ||||| || Sbjct 332032 TCCAAGCTGATATGAAATTATGGCCATTCCAAGTTGAGAATAAAAATAATAAGCCTAATG 332091 Query 451206 TTCAAGTAAATTATAA--AGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTAT 451263 || || || ||| ||| ||| || |||||| |||| || || ||||| |||| Sbjct 332092 TTGTTGTTAAAGTTAAGGAGGGGAAG--AAGACTTTTACTCCAGAGGAGATTTCTGCTAT 332149 Query 451264 GGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 |||| | || || |||||||| | || || ||| |||| ||| | |||| Sbjct 332150 GGTTTTGACGAAGATGAAAGATATTGCTGAGACTTATCTTGGAAAGGAAGTCAAGCATGC 332209 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 || |||||||| || || || ||||||||||| ||| | ||||| ||||| ||||| || Sbjct 332210 TGTTATTACTGTACCAGCCTACTTCAATGATGCTCAAAGACAAGCTACTAAGGATGCTGG 332269 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 | |||||| || ||||||||| || ||||||| |||||||| || || ||||| | || Sbjct 332270 AACTATTGCCGGATTAAATGTTGTTAGAATTATCAATGAACCAACTGCTGCTGCAATTGC 332329 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 |||||| ||| || | ||| | | ||||| |||||| | ||||| ||| |||| Sbjct 332330 CTATGGATTAG----ATAAGAAGGA--GGGTGAAAAGAATATTCTTGTATTCGATCTTGG 332383 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 || || ||| |||| ||| | ||| | || || | || |||||||| ||| ||| Sbjct 332384 AGGTGGTACTTTTGATGTCTCTCTCCTTACTATCGATAACGGAGTATTTGAGGTATTGGC 332443 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||| ||||| ||||| ||| |||||||||||||| | ||| Sbjct 332444 AACTAATGGAGATACACATTTAGGAGGTGAAGATTTCGAT 332483 >seq2 Length=3462877 Score = 215 bits (238), Expect = 2e-50 Identities = 417/608 (69%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 451004 CGAACTACTCCTTCATGGGTAAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCT 451063 || ||||| || |||| || |||||| ||| | ||||||||| | || | || ||| Sbjct 319493 CGTACTACACCATCATATGTTGCTTTTACTGATACCGAAAGACTTATTGGAGATGCAGCT 319434 Query 451064 AAATCAAT--GGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTG 451121 ||| ||| ||| | ||| | ||||| | || | ||| ||||||||| | |||| Sbjct 319433 AAA--AATCAGGTTGCTATGAATCCACAAAACTCTGTTTTTGACGCTAAACGTCTTATTG 319376 Query 451122 GCCGTATGTATGATGATGATACTGTACAAAAAGAGA--AAAAATT--CTTTTCTTATGAT 451177 | | | | ||||||| | |||| ||| || | ||| ||| | ||| | | | Sbjct 319375 GAAGAAAATTCGATGATGCTGCTGTCCAAGCTGATATGAAACATTGGCCATTCAAA-GTT 319317 Query 451178 GTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACT 451237 ||| | | ||| || | ||||||| | | |||||||||| |||||| Sbjct 319316 GTATCTGCTGATGGTGGACGACCAAAAGTTCAAGTTGAATTTAAAGGTGAAGTCAAAACT 319257 Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || || ||||| |||||||| ||||| ||||||| || || || ||| Sbjct 319256 TTCTTCCCAGAGGAGATTTCTTCTATGGTCCTTACAAAAATGAGGGAGACTGCTGAAGCT 319197 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| || || |||||||| || | |||||||| || || ||||| ||| | Sbjct 319196 TATCTTGGACAACCTGTAACTGATGCTGTTGTCACTGTTCCAGCCTACTTCAACGATTCT 319137 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||| | ||||| |||||||| || ||| |||||||| | ||||| | || |||||| Sbjct 319136 CAAAGACAAGCCACTAAAGACGCCGGAGCCATTGCTGGACTTAATGTCTTACGTATTATT 319077 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| ||||| |||||| | || || || | ||| || |||| | || |||| Sbjct 319076 AACGAACCAACAGCTGCTGCTATTGCTTACGGTTT-GGACAAG--AAAGGAGCAACAGAA 319020 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 ||| || | | || ||| |||| || || ||| |||| ||||| ||| ||||| Sbjct 319019 CGTAATGTTCTTATTTTCGATCTTGGAGGTGGTACTTTTGATGTCTCTGTCCTTACAATT 318960 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 |||||||| | || || || || |||| |||||| ||||| ||||||| |||||| Sbjct 318959 GAAGATGGAATCTTCGAGGTCAAATCAACTGCTGGTGACACTCACTTAGGAGGAGAAGAT 318900 Query 451598 ATTGATAA 451605 | ||||| Sbjct 318899 TTCGATAA 318892 Score = 147 bits (162), Expect = 9e-30 Identities = 380/574 (66%), Gaps = 14/574 (2%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| |||||||||||||| || || ||||| || ||||| ||||| || | || | Sbjct 318531 AATCCAGATGAAGCTGTTGCCTACGGAGCTGCTGTCCAAGCTGCTATCCTTTCTGG---A 318475 Query 452051 GATGA---TGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 || | |||| | |||| | || | | || || | || || ||||| ||| Sbjct 318474 GACAAGTCTGAAGCTGTCCAAGATTTACTTCTTCTTGACGTTGCTCCACTCTCTCTCGGA 318415 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 ||||||| ||||| || | |||||| | || || || || | ||||| Sbjct 318414 ATTGAAACTGCTGGAGGTGTCATGACTGCCCTCATCAAGAGAAATACCACCATTCCA--- 318358 Query 452168 AAAAAGAG---TCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAA 452224 | ||||| ||||||||| | || |||||||||||| || ||| || ||| Sbjct 318357 ACAAAGACATCTCAAACATTCACCACCTATGCTGATAACCAACCTGGGGTATTGATCCAA 318298 Query 452225 GTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTT 452284 || | |||||| ||||||||||||||| || || ||| || ||| |||| ||| Sbjct 318297 GTTTATGAAGGTGAACGTGCAATGACAAAGGACAACAATCTTCTTGGAAAATTCGAGCTT 318238 Query 452285 TCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGAT 452344 || || || || ||| | ||| || || ||||| |||| | || ||||| Sbjct 318237 TCTGGAATCCCACCAGCCCCACGTGGAGTACCACAGATTGAGGTTACTTTCGACATTGAT 318178 Query 452345 GCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATT 452404 || || ||||| |||||||| || || ||||| | |||||| | | || ||| Sbjct 318177 GCCAACGGTATCCTTAATGTCTCAGCTCAAGACAAATCCACCGGAAAACAAAACAAGATT 318118 Query 452405 ACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAA 452464 || |||||||| || ||| | | || || || || |||||| ||||| |||| Sbjct 318117 ACCATTACTAACGACAAAGGAAGACTTTCCAAGGAGGAGATTGAACGTATGGTCAATGAT 318058 Query 452465 GCAGAAAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAA 452524 || || |||| ||||| || |||||| || | | | |||| ||||| || Sbjct 318057 GCCGAGAAATACAAGGCCGACGATGAAAAACAACGTGACCGTGTTTCTGCTAAGAATGCT 317998 Query 452525 CTAGAAGGATATTGTTATCAA-ATGAAACAAACT 452557 || ||| ||| |||| |||| |||||||||||| Sbjct 317997 CTTGAATCATACTGTT-TCAACATGAAACAAACT 317965 Score = 132 bits (146), Expect = 2e-25 Identities = 358/542 (66%), Gaps = 12/542 (2%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || |||||| | || || || | ||||||||| |||||||| |||||||| |||| Sbjct 3401877 ATAGGTATTGATTTGGGTACAACATATTCATGTGTTGGTGTTTATAAAAATGGACGTGTA 3401936 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG--- 451033 |||||||| |||||||| |||||| || | ||| ||||| | || ||||| Sbjct 3401937 GAAATTATTGCAAATGATCAAGGAAACCGTATTACACCTTCCTATGTTGCATTTACTCCT 3401996 Query 451034 GATTCAG---AAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCA 451088 ||| | | || | || | || | ||||| ||| ||||| | | |||||| | Sbjct 3401997 GATACTGGTGAACGTCTCATCGGAGATGCTGCCAAAAATCAATTG--ACCTCAAATCCAG 3402054 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | || || || | ||||||||| | || |||| | | | ||| | || || | Sbjct 3402055 AGAATACTGTCTTTGATGCTAAGAGATTGGTTGGAAGAGAATTTACTGACAAGACCGTCC 3402114 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAA-AGGAAAGCCCTATATT 451207 || || | || || | | | | || || | | || | ||| | | || Sbjct 3402115 AAGCTGATATGAAGTTGTGGCCATTCAAGGTTGTTGACAAGAATAATAAACCACACGTTT 3402174 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | |||| | | || ||| | ||||| ||| | ||||||| |||||| |||||||| Sbjct 3402175 CTGTTAAAGT-TGGAGCTGATAAGAAAACATTTACAGCTGAAGAGATTTCAGCTATGGTT 3402233 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||||| |||| || || ||| |||| | | |||| || Sbjct 3402234 TTGACAAAGATGAAGGAAATTGCTGAGACATACCTTGGAAAAGAGATAAAACATGCCGTT 3402293 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || |||||||| ||||||||||||||||| ||| | ||||| || || || || ||| Sbjct 3402294 ATCACTGTTCCAGCTTATTTCAATGATGCTCAAAGACAAGCTACCAAGGACGCCGGAACA 3402353 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || || || | |||||| |||| | ||||| ||||| || || |||||| | || ||| Sbjct 3402354 ATCGCAGGACTGAATGTTGTTCGTGTAATTAACGAACCAACTGCCGCTGCTATTGCTTAT 3402413 Query 451448 GG 451449 || Sbjct 3402414 GG 3402415 Score = 129 bits (142), Expect = 2e-24 Identities = 395/601 (66%), Gaps = 16/601 (3%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 ||| | || ||||| ||||| || || ||||| || ||||||||| ||||| | | | Sbjct 3402951 ATTCACGAGATTGTTCTTGTTGGTGGATCTACTCGTATTCCTAAAGTTCAACAACT--TA 3403008 Query 451952 TCTTCTTATTTTGGA--GGAAAACAACTATGTAAGAGCGTA--AATCCTGATGAAGCTGT 452007 || ||| | | || || ||| || ||||| ||| || |||||||| ||||| Sbjct 3403009 TCAAGGAATTCTTCAACGGTAAGGAACCATC-AAGAG-GTATCAACCCTGATGAGGCTGT 3403066 Query 452008 TGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGG 452067 ||| ||||||||||| ||||||| | | | | | || ||| ||| | | || Sbjct 3403067 TGCTTATGGTGCTGCCGTTCAAGGTGGTGTCATCTCTGG---AGAAGATTCGACCTCCGG 3403123 Query 452068 AGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAAT 452127 | ||| | | | ||||||| || || | | || ||||||| | |||||| | Sbjct 3403124 A---ATTGTCCTTCTCGATGTAAACCCACTTACATTAGGTATTGAAACTGTCGGTGGAGT 3403180 Query 452128 GATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAG 452187 ||||| || | || | || ||| ||| || || || |||| ||| Sbjct 3403181 CATGACCAAACTTATCCCAAGAAATACTGTTATCCCAACAAAGAAATCTCAAGTATTCTC 3403240 Query 452188 TACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247 |||||| |||||| |||||| |||||||||||||| || ||||||||||| |||| Sbjct 3403241 TACAGCTGCTGATAATCAACCAACCGTAACTATTCAAGTTTTCGAAGGAGAACGCCCAAT 3403300 Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAG 452307 ||| ||| ||| | |||| || |||| ||| | ||| |||| ||| | Sbjct 3403301 GACTAAAGACAATCACCAACTTGGTAAATTCGATCTCACTGGTATTGCTCCAGCCCCACG 3403360 Query 452308 GGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAG 452367 || ||| ||||| ||| |||| | || |||||| |||||||| ||| |||| Sbjct 3403361 TGGTGTTCCACAAATCGAAGTTACATTCGAGATTGATGTTAATGGTATCCTTCATGTATC 3403420 Query 452368 TGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACC 452426 || | || || | | ||| | |||| || || ||||| || ||||| ||||| Sbjct 3403421 CGCCGAGGATAAGGGAACAGGATCA-AAGAATAAGATCACAATCACAAATGACCAAAACA 3403479 Query 452427 GTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATG 452486 | | ||| |||||| |||||| ||| | |||| || || |||||| ||||| | Sbjct 3403480 GACTTTCTCCAGAAGACATTGAACGTATGATCAATGATGCCGAGAAATTCGCTGATGAGG 3403539 Query 452487 A 452487 | Sbjct 3403540 A 3403540 Score = 102 bits (112), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451475 GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA 451534 |||| ||| ||| | || |||||||| ||||| || || |||| ||| | ||| || Sbjct 3402595 GAAAGAAACATTCTTGTCTTTGATTTAGGTGGTGGTACCTTTGATGTATCTCTTCTTACA 3402654 Query 451535 ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 || || |||| |||||||||||| ||||| ||||| ||||||||| ||||||||||| Sbjct 3402655 ATCGACAATGGAGTATTTGAAGTATTAGCAACAAATGGAGATACTCATTTAGGAGGTGAA 3402714 Query 451595 GATATTGAT 451603 ||| | ||| Sbjct 3402715 GATTTCGAT 3402723 >seq4 Length=2360143 Score = 152 bits (168), Expect = 2e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || |||| || ||||| || |||||||| || || | ||| Sbjct 1035469 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035528 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| |||||||| ||||| ||||| || || || ||| Sbjct 1035529 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035588 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | ||||| ||| | || ||||||||||| |||||||||||| | | ||||||||| Sbjct 1035589 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATAAT 1035648 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| |||||||| || Sbjct 1035649 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1035677 Score = 152 bits (168), Expect = 2e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || ||||| || |||||||| || || | ||| Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| |||||||| ||||||||||| || || || ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | ||||| ||| | || ||||||||||| |||||||||||| | | ||||||||| Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| |||||||| || Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1036133 Score = 143 bits (158), Expect = 1e-28 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || ||||| || |||||||| || || | ||| Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| |||||||| || || |||||||| || || ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | ||||| ||| | || ||||||||||| |||||||||||| | | ||||||||| Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| |||||||| || Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1036361 Score = 143 bits (158), Expect = 1e-28 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || ||||| || |||||||| || || | ||| Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || ||| |||||||||||||||||||| || || || ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || ||||||||||| |||||||||||| | | ||||| || Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| ||||||||||| Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGT 1036589 Score = 129 bits (142), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || |||| || ||||| || |||||||| || || | ||| Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| |||||||| ||||| ||||| || || || ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || ||||||||||| |||||||||||| | | ||||| || Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| |||||||| || Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1035905 Score = 129 bits (142), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||| || ||||| || |||||||| || || | ||| Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| |||||||| ||||| ||||| || || || ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | ||||| ||| | || ||||||||||| |||||||||||| | | ||||| || Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| |||||||| || Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1036817 Score = 98.7 bits (108), Expect = 4e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 420811 AATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAA 420870 || || || ||||||||||||||||||| ||| | | ||| ||||| || || ||||| Sbjct 745076 AAAACTACTGTTTTTGTAGGCATATTTATACCCATTGCAAATGTTTCTGTAGCAAACAAC 745017 Query 420871 ACTTTAATTAAtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATA 420930 ||||||| || ||||| | |||||| ||||||||||| |||| || | ||| Sbjct 745016 ACTTTAACATATCCCCTTGAAAATGTAATTTCCACAATTTCTTTCAAAAATGGTAGCATA 744957 Query 420931 CCAGAATGATG-ATATGCCACACCTC 420955 ||||||||||| ||| || | ||||| Sbjct 744956 CCAGAATGATGCATA-GCAATACCTC 744932 >seq3 Length=2731838 Score = 114 bits (126), Expect = 5e-20 Identities = 185/262 (71%), Gaps = 13/262 (5%) Strand=Plus/Plus Query 420694 ATAATAACTTCCCCAAATGTATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGA 420753 || ||||| | |||| |||||| | |||||||| ||||| | |||||||||||| | Sbjct 240516 ATGATAACATTTCCAACTGTATCCAGACCTCTTCTACCAGCCCTTCCTGCCATTTGGATG 240575 Query 420754 AATTCATCAGTTCGTAAGAATCTTCTACCACAATCATCATATTTA----GATAATCCAGT 420809 | || | | ||| |||| || | |||||| |||| || | || Sbjct 240576 TACTCTGTACATGTTAAAGCTCTTTTAGTTTTACCATCATGTTTATCCAGAGAGTC---- 240631 Query 420810 AAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAA 420869 ||| ||||| |||||||| |||||||| ||||| | || ||| || ||||| || || || Sbjct 240632 AAAAACAACTGTTTTTGTCGGCATATTGACACCCATAGCAAATGTCTCAGTAGCAAATAA 240691 Query 420870 AACTTTAATTAAtttttt--tGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATT 420927 |||||||| | || | ||||| ||||||| ||||||||| || || || | | Sbjct 240692 TACTTTAATATACCCATTGCTAAATAAC--ATTTCAATAATTTCTTTCAATATGGGTAGT 240749 Query 420928 ATACCAGAATGATGATATGCCA 420949 |||||||||||||| |||||| Sbjct 240750 ATACCAGAATGATG-GATGCCA 240770 >seq1 Length=5851329 Score = 114 bits (126), Expect = 5e-20 Identities = 296/445 (67%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 502390 CACTAATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCAT 502449 || ||||||| || || ||||||||||| | | || | | ||||||| |||| |||| Sbjct 2655139 CATTAATGCCCACTGCTTCTACATCTCAGATTCTTGGGAGTAATGAATCTATTGAGCCAT 2655198 Query 502450 TTACTTCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAAC 502509 ||| || ||| ||||||| ||| | |||| | ||||| ||| | |||| |||| | Sbjct 2655199 ATACATCAAATTTATATACAAGACGGGTTTTATCTGGTGATTTTCAAATTGTAAATACTC 2655258 Query 502510 ATTTAATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAA 502569 || | || ||||| | | | ||| |||| | |||||| | || ||| Sbjct 2655259 ATCTCCTACGAGATTTAATTAGCCTTGGTATTTGGAACGAGGAAATTCTTAATCAAATAA 2655318 Query 502570 TTAATGATAATGGTTCTATTCAAAATATAT--TACTACCTAATATA-ATTAAAAACATCT 502626 || | ||||||| |||||||||||||||| || | | || | |||| | | || Sbjct 2655319 TTGAAAATAATGGGTCTATTCAAAATATATGCGACATTCCATTACATATTAGAGAACTCC 2655378 Query 502627 ATCAAACTTCATATGAAATGAAACAAAAATATATAAT--AGATGGATGTTCTATACGGGG 502684 || ||||| | ||||| ||||||| ||| || | |||| || || || || Sbjct 2655379 ATAAAACTGTTTGGGAAATTCCACAAAAAGCTATTATTGAAATGGCAATT-GAT-CGTGG 2655436 Query 502685 AGCTTATATAGATCAAACCCAATCTATGAATCTTTATTTTGCACAACCAGACTCTCAAAA 502744 ||| | |||||||| | ||||| | |||||| || | ||||| | | || Sbjct 2655437 TCCTTTTGTAGATCAATCTCAATCACTTAATCTTCATGTAAATAAACCAACTTATGGAAT 2655496 Query 502745 ATTAACTTCCTCTCAATTTTATGCATGGGAACAAGGATTAAAAACAGGGTTATATTATTT 502804 || | ||| || ||||||| ||| || | || || ||||||||| | || ||||| Sbjct 2655497 ATGTAGTTCGATGCATTTTTATGGTTGGAAAAATGGTTTGAAAACAGGGATGTACTATTT 2655556 Query 502805 ACGTAGCAAACCATCAGCAAATGCT 502829 | | | ||||| |||||||| || Sbjct 2655557 AAGAACTAAACCGGCAGCAAATCCT 2655581 Score = 109 bits (120), Expect = 2e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || |||||||| ||||| |||||||| || || |||| Sbjct 5400305 AATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATC 5400364 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | ||| ||||| ||||| || |||||||| || || || || Sbjct 5400365 AGATACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACCA 5400424 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 5400425 ACAACGTCTTATTTT 5400439 Score = 104 bits (114), Expect = 9e-17 Identities = 191/272 (70%), Gaps = 10/272 (4%) Strand=Plus/Plus Query 560251 AGAAGGTGATATGGGTAAAATTTATGGTTTTAACTGGAGACATTTTGGTGCTGATTAT-A 560309 |||||||||| | || |||| ||||| | |||||||||||||||||||| ||| | Sbjct 5221564 AGAAGGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGA 5221623 Query 560310 TTAATTGTAACACCAATTATACAGGAAAAGGATTTGATCAACTTGTTAAAATTATTGAGG 560369 | | | | || | ||||||||||||||| |||||||||| | | ||||||| Sbjct 5221624 GGGAGT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATTGATC 5221682 Query 560370 AAATAAAAACCAATCCTTCTAGTAGAAGAATTTTAATGTCAGATTTTGATCCAGCTACAT 560429 ||||||||| ||| |||||| ||||||||| | | || | || ||||| || || Sbjct 5221683 AAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCT-GAT 5221741 Query 560430 C-CCACCAAGGAGTGTTATACCCATGTCATTCTTTAGTTCTTCAATTTTATGTAAGAGAC 560488 | | || || ||| ||||||||| | | || ||||||||||||| ||| Sbjct 5221742 CTTGATAAAATGGTTTTACCTCCATGTCATAC---ACTTGTTCAATTTTATGTTCAAGAT 5221798 Query 560489 GAAGATATATTAGATGTTAAAATGTATCAACG 560520 | ||| || || || | | |||||||||| Sbjct 5221799 GGAGAGTTA--AGTTG-TCATTTGTATCAACG 5221827 >seq39 Length=376693 Score = 104 bits (114), Expect = 9e-17 Identities = 233/348 (67%), Gaps = 24/348 (7%) Strand=Plus/Plus Query 63723 AACACCACCTAAATCAGCTAAATTTTCACCTAAAGTTAATTTTCCATTTA--GT----TT 63776 ||||||||| |||||| | ||||||||||| |||||||||||||||| || || Sbjct 177533 AACACCACCATTATCAGCAATATTTTCACCTATTGTTAATTTTCCATTTACGGTCAAATT 177592 Query 63777 TGTATTAAATAATTCTAACTTGTTAAATTGATCCTC--TAATTTAAATGC-TTCTT---- 63829 ||| | || |||| ||| ||||||| || || ||| ||||| Sbjct 177593 GGTACCGGGAACTTTAAACTGATTATATTGATCAATGATACATTTTTTGCGTTCTTGAAA 177652 Query 63830 --CAGTAAATTGTTTAGTATCCTTATCACTCCACCAATTATTTAAATTACCATCCGCATC 63887 || |||| || |||||| ||||||||| | |||||||| ||| Sbjct 177653 GCCATTAAAACTTTCTGTATCC---------CACCAATTAAAAAGATTACCATTTTTATC 177703 Query 63888 AAATCTTTTTCCTTGATCATCAAACCCATGAGTGATTTCATGAGCTATAACTACTCCAAT 63947 | || ||||||||||||||||||||||||| ||||||||| | ||||| | || || Sbjct 177704 ATATTGGCTTCCTTGATCATCAAACCCATGAGTAATTTCATGACCAATAACAGCACCGAT 177763 Query 63948 TCCTCCATAATTTTGTGCAATCGTATAATCTAAACTaaaaaaaGGTGGTTGTAAAATAGC 64007 || |||||||| ||| | | | ||| |||||| || |||||||| | ||| | Sbjct 177764 ACCACCATAATTAACTGCTTTTGGAAAATTACCACTAAAGAATGGTGGTTGAAGTATACC 177823 Query 64008 AGCTGGAAATACAATTTCATTTAATAAAGGATGATAATAAGCATTTAC 64055 ||||| ||| || |||| | |||| |||| | ||||| || Sbjct 177824 GGCTGGGAATGTTATAGAATTTCTTTCAGGAGAATAAAATGCATTAAC 177871 >seq40 Length=350319 Score = 95.1 bits (104), Expect = 5e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63858 CCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAACCCATG 63917 ||||||||| |||||| || | ||||||| | ||||||||||||||| ||||| Sbjct 293495 CCACCAATTTCGTAAATTTCCTATCTTATCAAATTGTGATCCTTGATCATCAAATCCATG 293554 Query 63918 AGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAATCGTATAATC 63977 || |||||||| | ||||| |||||||||||||||||||| | | | | |||| Sbjct 293555 GGTAATTTCATGTCCAATAACAGCTCCAATTCCTCCATAATTTATAGATTTTGGA-AATC 293613 Query 63978 -TAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATTTAATAAAG 64036 | | ||| || || | | |||||| || ||||| || |||| ||||| | || Sbjct 293614 TTCTATCAAAGAATGGGGCTCTTAAAATTGCTGCTGGGAAGGTAATTGCATTTTTAACAG 293673 Query 64037 GATGATAATAAGCATTTAC 64055 | |||| ||||||| || Sbjct 293674 AACTATAAAAAGCATTAAC 293692 >seq19 Length=641719 Score = 87.8 bits (96), Expect = 7e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGA 96108 |||||| | ||| |||| ||||| ||||||||||| ||| ||||| |||| Sbjct 368400 TGCAATCTCTGGTACTAAAGGATCATCAGGATTTGGATCACATAATAACGAACATATACT 368459 Query 96109 TAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACA 96168 ||| | ||||| || |||||||||| ||| | | | |||||||||| | ||| Sbjct 368460 TAATAAAACTTTTGATATTGTTAATGCTGGTGACCACTGAGCTCTTAAAATATCAAGACA 368519 Query 96169 AATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGG 96228 ||| || | | | ||||||||||||| || || ||| ||||| | |||||| Sbjct 368520 AATACTTCCATTTGAATTAATATTTGGATGGTATATTTTTGTTGTAAATGCGACTTTAGG 368579 Query 96229 AGGCTTATATGGATAGTCTTCAGGAAAA 96256 ||| ||| | ||||| ||| |||||| Sbjct 368580 AGGTTTAAACGGATAATCTGTTGGAAAA 368607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975703540745396