Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 506 3e-138 seq1 255 7e-63 seq18 181 1e-40 seq233 161 1e-34 seq20 105 8e-18 >seq2 Length=3462877 Score = 506 bits (560), Expect = 3e-138 Identities = 1165/1746 (67%), Gaps = 58/1746 (3%) Strand=Plus/Plus Query 6344 TACATCTTTGTAATGATTGGTGTACATACATCTGTAAGTTCCTTCTGTTTAGCCTCAAAC 6403 ||||| || ||||| ||||| | || | || ||||||||| ||| || | ||||| Sbjct 317789 TACATTTTAGTAATAATTGGATTGCAGATTCCTTCAAGTTCCTTTTGTCTATCTTCAAAT 317848 Query 6404 TCTTCTGTTTCGGCAGATTGGTTCGCGTCTAACCATTCAAGTACCTC-----------CG 6452 |||||| |||| ||||||||||| || | ||| | || | || | Sbjct 317849 TCTTCTTTTTCAGCAGATTGGTTGCTTTCAAGCCAGTGGAGGATTTCGTCACATTTCTCA 317908 Query 6453 AAACCTTCGTT-------TCGACCGTTTCCTTATCCTCACCTTCAATCTTTTCGACCGTT 6505 | | ||| || ||| | | |||||||| | ||| | |||| ||| Sbjct 317909 ATAACTTTCTTAACATCATCGGCAGGAATCTTATCCTTAACTTTTTCATCCTCGAGAGTT 317968 Query 6506 CCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTA 6564 |||||| |||| ||||||| ||| ||| ||||||| || || | | ||| Sbjct 317969 TGTTTCATGTTGA-AACAGTATGATTCAAGAGCATTCTTAGCAGAAACACGGT-CACGTT 318026 Query 6565 CTTTT-CATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTT 6623 |||| |||| || | || || || || ||||| | |||||| |||||| || || | Sbjct 318027 GTTTTTCATCGTCGGCCTTGTATTTCTCGGCATCATTGACCATACGTTCAATCTCCTCCT 318086 Query 6624 TCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTAT 6683 | || | ||| || || || || ||||| |||||||| | ||| || | || || | Sbjct 318087 TGGAAAGTCTTCCTTTGTCGTTAGTAATGGTAATCTTGTTTTGTTTTCCGGTGGATTTGT 318146 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 ||| ||| ||||| | ||||| || ||||||| ||||| | || | ||| |||| Sbjct 318147 CTTGAGCTGAGACATTAAGGATACCGTTGGCATCAATGTCGAAAGTAACCTCAATCTGTG 318206 Query 6744 GTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTAT 6803 || || | || || | ||| || || | | || ||| | ||||| | | |||| | Sbjct 318207 GTACTCCACGTGGGGCTGGTGGGATTCCAGAAAGCTCGAATTTTCCAAGAAGATTGTTGT 318266 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 || | | | | ||||||||||||||| |||| || ||| ||||||| ||||| Sbjct 318267 CCTTTGTCATTGCACGTTCACCTTCATAAACTTGGATCAATACCCCAGGTTGGTTATCAG 318326 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | ||| |||| | |||| | |||||| || ||||||||| || | | Sbjct 318327 CATAGGTGGTGAATGTTTGAGATGTCTTTGTTGGAATGGTGGTATTTCTCTTGATGAGGG 318386 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | ||| || |||||| | ||| ||||| || || | ||||| | || | Sbjct 318387 CAGTCATGACACCTCCAGCAGTTTCAATTCCGAGAGAGAGTGGAGCAACGTCAAGAAGAA 318446 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 | ||||| |||| ||| | || || | | ||| || |||||||| | || | Sbjct 318447 GTAAATCTTGGACAGCTTCAGACTTGTCTCCAGAAAGGATAGCAGCTTGGACAGCAGCTC 318506 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || || ||||| || || || | ||| || |||| Sbjct 318507 CGTAGGCAACAGCTTCATCTGGATTGATGGATTTGTTAAGTTA----------------- 318549 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | | ||||| | ||| || || ||||| || || || || | |||||| || | Sbjct 318550 -----AGCTTTTGT---ACTTTTGGAATACGTGTTGAACCCCCAACAAGAACGATGTCGT 318601 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 |||| ||| || ||||| | || ||||| | || || || || ||||| | Sbjct 318602 GAACTTGTCCTTTGTCCATCTTAGCATCACGAAGGGCCTTCTCTACTGGGTCCATTGTGT 318661 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | | ||| | || || || ||||| ||||| || || || ||| || ||||| | Sbjct 318662 TTCTGAAAAGATCGGCGCAAAGCTCCTCGAAACGGGCGCGAGTGATGTTGGTGTAGAAGT 318721 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 ||| || || |||| |||||||||||||| | | ||| | | ||||| | |||| Sbjct 318722 CAATACCATCAAATAATGAATCAATTTCAATAGAAGCTTGGGTTGAAGAAGAGAGTGTTC 318781 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||||| ||||| || |||| |||||||| || ||||| || ||| || | | Sbjct 318782 TCTTTGCGCGTTCACAAGCTGTTCTCAAACGACGGAGAGCACGTGGATTAGATGAGAGGT 318841 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||||| ||||| | ||||| || | | |||||| || | | |||||||| Sbjct 318842 CCTTCTTGTGTTTCCTCTTAAATTCATTAACGAAGTGGGTAACCATGCGGTTATCGAAAT 318901 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 |||| || || ||||| || || || || || | |||||| || ||||| || |||||| Sbjct 318902 CTTCTCCTCCTAAGTGAGTGTCACCAGCAGTTGATTTGACCTCGAAGATTCCATCTTCAA 318961 Query 7524 TGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGT 7581 | | ||| || || |||||||| |||||||| || || || ||||| || || || ||| Sbjct 318962 T-TGTAAGGACAGAGACATCAAAAGTACCACCTCCAAGATCGAAAATAAGAACATTACGT 319020 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | || ||||| || | |||||| || ||||| || || |||||||| ||||| Sbjct 319021 TCTGTTG-CTCCTTTCTTGTCCAAACCGTAAGCAATAGCAGCAGCTGTTGGTTCGTTAAT 319079 Query 7642 AATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 |||||| |||||| || || |||||||| | | | || ||||| || ||||||| ||| | Sbjct 319080 AATACGTAAGACA-TTAAGTCCAGCAATGGCTCCGGCGTCTTTAGTGGCTTGTCTTTGAG 319138 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACG 7760 ||||||| |||||||| || || || || || || || || || | || ||||| | Sbjct 319139 AATCGTTGAAGTAGGCTGGAACAGTGACAACAGCATCAGTTACAGGTTGTCCAAGATAAG 319198 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 ||| || | || ||||||| ||||| ||||| || |||||||| || | | | | Sbjct 319199 CTTCAGCAGTCTCCCTCATTTTTGTAAGGACCATAGAAGAAATCTCCTCTG-GGAAGAAA 319257 Query 7821 GTTTCG-TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 |||| | |||||| ||||| ||||||| || | ||| | || || | | | | Sbjct 319258 GTTTTGACTTCACCTTTAAATTCAACTTGAACTTTTGGTCGTCCACCATCAGCAGATACA 319317 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 || || | | ||||| ||||||||| ||||||| || || |||||||| Sbjct 319318 ACTTTGAATGGCCAATGTTTCATATCAGCTTGGACAGCAGCATCATCGAATTTTCTTCCA 319377 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 |||||||| || || |||||||| | ||||| || ||||| || || || || || Sbjct 319378 ATAAGACGTTTAGCGTCAAAAACAGAGTTTTGTGGATTCATAGCAACCTGATTTTTAGCT 319437 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 || || || ||||| | ||| || || ||||| || || || ||||| || || ||| Sbjct 319438 GCATCTCCAATAAGTCTTTCGGTA---TCAGTAAAAGCAACATATGATGGTGTAGTACGA 319494 Query 8060 TTCCCT 8065 || ||| Sbjct 319495 TTACCT 319500 Score = 170 bits (188), Expect = 2e-37 Identities = 373/555 (67%), Gaps = 8/555 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| | ||| || || ||||| || || |||||||| ||||| | ||||| | Sbjct 3402427 TTCTTATCTAAACCATAAGCAATAGCAGCGGCAGTTGGTTCGTTAATTACACGAACAACA 3402368 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||| || || || ||| | || || || || ||||||| ||| | ||| || || || Sbjct 3402367 TTCAGTCCTGCGATTGTTCCGGCGTCCTTGGTAGCTTGTCTTTGAGCATCATTGAAATAA 3402308 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | || || | | | | || || || || | || || || || Sbjct 3402307 GCTGGAACAGTGATAACGGCATGTTTTATCTCTTTTCCAAGGTATGTCTCAGCAATTTCC 3402248 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| || || | |||||| | ||||||||||||||| | ||| |||| | ||| | Sbjct 3402247 TTCATCTTTGTCAAAACCATAGCTGAAATCTCTTCAGCTGTAAATGTTTTCTTATCAGCT 3402188 Query 7835 TTAAAATCAACTTCAATCATG-GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || | ||| || | || ||||||| | | | |||||| | | ||| Sbjct 3402187 CCAACTTTAAC-AGAAACGTGTGGTTTAT---TATTCTTGTCAACAACCTTGAATGGCCA 3402132 Query 7894 ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGC 7953 |||||||| ||||||| | ||| | ||| | |||||| | | | ||| || Sbjct 3402131 CAACTTCATATCAGCTTGGACGGTCTTGTCAGTAAATTCTCTTCCAACCAATCTCTTAGC 3402072 Query 7954 ATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAG 8013 |||||| || || || | || || || ||| || || || || || ||||| || Sbjct 3402071 ATCAAAGACAGTATTCTCTGGATTTGAGGTCAATTGATTTTTGGCAGCATCTCCGATGAG 3402012 Query 8014 ACGTTCATTATTTTC---CGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTC 8070 ||||||| | | || ||||| || || || || || || | || || ||||| || Sbjct 3402011 ACGTTCACCAGTATCAGGAGTAAATGCAACATAGGAAGGTGTAATACGGTTTCCTTGATC 3401952 Query 8071 GTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || |||||||||||||| || | |||| | || || || || ||||| ||||| || Sbjct 3401951 ATTTGCAATAATTTCTACACGTCCATTTTTATAAACACCAACACATGAATATGTTGTACC 3401892 Query 8131 TAAATCAATACCGAT 8145 ||||||||||| || Sbjct 3401891 CAAATCAATACCTAT 3401877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 379/583 (65%), Gaps = 22/583 (4%) Strand=Plus/Minus Query 6587 TTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTC 6646 || || ||||| | || ||| ||||||||||||| || | ||| | ||||| Sbjct 3403525 TTCTCGGCATCATTGATCATACGTTCAATGTCTTCTGGAGAAAGTCTGTTTTGGTCATTT 3403466 Query 6647 GTAATCGTAATCTT-TTCGGATTTACCC-GAGGCCTTATCTTCAGCACTTACATTCAAAA 6704 || || || ||||| ||| || | || | ||||||| || || ||||| | | Sbjct 3403465 GTGATTGTGATCTTATTCT--TTGATCCTGTTCCCTTATCCTCGGCGGATACATGAAGGA 3403408 Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| |||||| ||||| | || | |||||||| ||| | ||| ||||| Sbjct 3403407 TACCATTAACATCAATCTCGAATGTAACTTCGATTTGTGGAACACCAC---GTGGGGCTG 3403351 Query 6765 GA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTT 6821 || ||||| || | ||| ||| |||||||| || || | | | | |||| Sbjct 3403350 GAGCAATACCAGTGAGATCGAATTTACCAAGTTGGTGATTGTCTTTAGTCATTGGGCGTT 3403291 Query 6822 CACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTT 6881 | ||||| | |||| ||| || || | ||||||||||| || || ||||| | || Sbjct 3403290 CTCCTTCGAAAACTTGAATAGTTACGGTTGGTTGATTATCAGCAGCTGTAGAGAATACTT 3403231 Query 6882 GTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCA 6941 | |||||| | ||| || |||||||| || |||| |||||| | ||||| | Sbjct 3403230 GAGATTTCTTTGTTGGGATAACAGTATTTCTTGGGATAAGTTTGGTCATGACTCCACCGA 3403171 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATT 7001 |||||| | || | | || || | || | | ||| ||| || || | Sbjct 3403170 CAGTTTCAATACCTAATGTAAGTGGGTTTACAT-CGAGAAGGACAATTCCGGA----GGT 3403116 Query 7002 CGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 || |||| || | | || | |||| || | || || || || || ||||||| Sbjct 3403115 CG-AATCTTCTCCAGAGATGACACCACCTTGAACGGCAGCACCATAAGCAACAGCCTCAT 3403057 Query 7062 CGGGGTTAAT-CGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--GATAACATTTGTT 7118 | ||||| || | | || | |||| |||||||| || | ||| |||| | ||||| Sbjct 3403056 CAGGGTTGATACCTCTTGAT-GGTTCCTTACCGTTGAAGAATTCCTTGATA--AGTTGTT 3403000 Query 7119 GAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| ||| || || || || |||||||| || | ||| || || Sbjct 3402999 GAACTTTAGGAATACGAGTAGATCCACCAACAAGAACAATCTC 3402957 >seq1 Length=5851329 Score = 255 bits (282), Expect = 7e-63 Identities = 642/954 (67%), Gaps = 39/954 (4%) Strand=Plus/Minus Query 22084 ATTACAGGTATAACTGGTCAAGATGGTTCATATTTAGCCGAATTTTTACTTGAAAAAGGG 22143 || || ||||| ||||||||||||||||| ||||| || ||||| | | | |||||| Sbjct 4802758 ATCACTGGTATTACTGGTCAAGATGGTTCTTATTTGGCTGAATTACTTATAGCTAAAGGG 4802699 Query 22144 TATAAAGTACACGGTAT---CGAAAGACGTTGTTCTTATAATCATAATAGAATAA-ATAC 22199 || ||||| ||||| | ||| | | | |||| | || | || | | Sbjct 4802698 TACTCTGTACATGGTATTATCCGTAGATCGTCAACATTTAATACTCATCGTATTGCACAT 4802639 Query 22200 TATTAT--TGAACCAAA-ATACAGAAA---TCACGAAAATCTTACTATGCACTACGGTGA 22253 | ||| ||| || || ||||| ||| ||| || || | | | || || ||||| Sbjct 4802638 TTATATGCTGATCCTAATATACACAAAGGATCATCAACATTTCAGCTT-CATTATGGTGA 4802580 Query 22254 TATGACAGATGAATCATGCCTTTTTAATATCATCGACACGGTTAGACCATCAGAAATATA 22313 |||||| ||| ||||||||| |||| | || | || |||| | ||||| || Sbjct 4802579 TATGACTGATTCATCATGCCTAATTAAGTTGATGTCAAAAATTCAACCAACTGAAATTTA 4802520 Query 22314 TAACCTGGCGGCACAATCACATGTCG--GTTTATCATTTAAAATGCCTATATATACATCG 22371 | | || || |||||| ||||| ||| | ||| | | ||| ||||||| | Sbjct 4802519 TCATCTTGCAGCACAAAGTCATGTTAAAGTTAGT--TTTGATTTACCTGAATATACAGCA 4802462 Query 22372 GAAGTTGATGGTATAGGTGTGTTGAAAATTCTAGAAGCGATCCGTTTAGCAGG---TCT- 22427 || || |||| | ||||| || | | |||| || || || ||||| | ||| Sbjct 4802461 GAGGTCGATGCTGTAGGTACATTAAGACTTCTTGATGCTATAG---TAGCATGCAATCTT 4802405 Query 22428 -AACAAAAACGTGTAAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATG 22486 |||| ||| || | ||||||||| || ||||| ||||| || || || ||||| | | Sbjct 4802404 CAACATAAA-GTC-AGATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAG 4802347 Query 22487 AAACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAAT 22546 ||| || ||||| || | ||||| || || || || ||||||| ||||| |||| Sbjct 4802346 AAATCCCTCAAAAAGAGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAAT 4802287 Query 22547 TGATGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATG 22606 || | |||||| | | |||||| | ||| |||| || || ||||| ||||||| Sbjct 4802286 TGTACGCTTATTGGATAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATG 4802227 Query 22607 GTATAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAA 22666 |||| | ||||| || |||||||| ||| | ||| | || || || ||| ||||||| | Sbjct 4802226 GTATTTTATTCAATCATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTA 4802167 Query 22667 CACTCGGTGTCGCTAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAG 22726 || | ||| ||||| |||||| |||| ||| || |||| |||||||| | | Sbjct 4802166 CAAGGGCTGTAGCTAAAATCAGTATAGGTGTTCAAGAAACATTATTACTTGGTAATTTGG 4802107 Query 22727 ATGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTAC 22786 |||| ||||| |||||||||||||| || || || || |||||||| ||| | | Sbjct 4802106 ATGCCAAACGTGATTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTC 4802047 Query 22787 AACAAGATAAACCGGAAGATTTTGTTATTGCAACAGGCGTAACAACAACCGTGAGAGAAT 22846 |||| ||| |||| || || ||||||||||| ||||| ||| || || ||||| Sbjct 4802046 AACATGATGAACCAGATGACTTTGTTATTGCTACAGGTAAAACTCAAAGTGTCAGAGA-- 4801989 Query 22847 TTACCCAAAAAT--CATTTAAATGTATAGGTAT-AAATTTATCTTTCAAGGGTGATGGAA 22903 || | || | | ||| || ||||| ||||| || | ||| ||||| ||| Sbjct 4801988 TTTCTGTAACTTGGCTTTTTCCGAAATTGGTATAAAATTAATATGGCAA-GGTGAAGGAG 4801930 Query 22904 AATATGAAATTGGTGTAAATGAGGAAAAT---GGAGATGTTTTAGTTCGTGTGCACCCGG 22960 ||||| ||||| | |||||| ||| || | || ||||| || | || Sbjct 4801929 TTAATGAAGTTGGT---ATTGAGGAGAATACAGGGAAAATTCGTGTTCGCGTTGATCCAA 4801873 Query 22961 ATTATTTCAGACCTGCAGAAGTTGA-ATTATTATTAGGTGACCCTACAAAAGCT 23013 |||||| ||||| | |||||||| || | ||| || ||||| ||||||||| Sbjct 4801872 ATTATTATAGACCAACTGAAGTTGATCTTCTCATT-GGAGACCCAACAAAAGCT 4801820 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 24933 GACTGGGGTCACGCAAAAGATTTTGTCGAAGCTATGTGGTTAATATTACAAAGTGATACA 24992 || |||||||| || || || | ||| |||||||||||| ||| | ||| |||| | Sbjct 4802095 GATTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAA 4802036 Query 24993 CCAGATGATTATGTAATAGCAACTGGTAAATATAATACAGTTAGGAAATTTATAGAA-AT 25051 |||||||| | ||| || || || |||||| | | | || | || |||| | || | Sbjct 4802035 CCAGATGACTTTGTTATTGCTACAGGTAAAACTCAAAGTGTCA-GAGATTTCTGTAACTT 4801977 Query 25052 AACTGTAGACGTCATGGGTaaaaaaaTAAATTGGGAAGGTGAAGGAGTTGACGAAATTGG 25111 || | || || |||| |||| ||| ||| |||||||||||||| | ||| |||| Sbjct 4801976 GGCTTTTTCCGAAATTGGTATAAAATTAATATGGCAAGGTGAAGGAGTTAATGAAGTTGG 4801917 Query 25112 TAT 25114 ||| Sbjct 4801916 TAT 4801914 >seq18 Length=667832 Score = 181 bits (200), Expect = 1e-40 Identities = 467/707 (66%), Gaps = 37/707 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||||||| || || |||||||| || || || || ||||| | || Sbjct 332483 ATCGAAATCTTCACCTCCTAAATGTGTATCTCCATTAGTTGCCAATACCTCAAATACTCC 332424 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | || |||||||| |||||||| || || || || | || | Sbjct 332423 GTTATCGATAGTAAGGAGAGAGACATCAAAAGTACCACCTCCAAGATCGAATACAAGAAT 332364 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | || | || || |||||| | || || || || || || || |||||||| Sbjct 332363 ATTCTTTTCACCCTCCTT---CTTATCTAATCCATAGGCAATTGCAGCAGCAGTTGGTTC 332307 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||| ||||| | || | || | || ||||||||| | ||||| || || ||||||| Sbjct 332306 ATTGATAATTCTAACAACATTTAATCCGGCAATAGTTCCAGCATCCTTAGTAGCTTGTCT 332247 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| | ||| || |||||||| || || || | || || | | |||||| ||| || || Sbjct 332246 TTGAGCATCATTGAAGTAGGCTGGTACAGTAATAACAGCATGCTTGACTTCCTTTCCAAG 332187 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| | || || ||||||||||| || || | |||||| | |||||||| || | | Sbjct 332186 ATAAGTCTCAGCAATATCTTTCATCTTCGTCAAAACCATAGCAGAAATCTCCTCTGGAGT 332127 Query 7816 AAA---CTGTTTCGTTTC---ACCGTTAAAATCAACTTCA-----ATCATGGGTTTATCC 7864 ||| || ||| || | | |||| | |||| | | || || ||||| | Sbjct 332126 AAAAGTCTTCTTCCCCTCCTTAACTTTAACAACAACATTAGGCTTATTAT--TTTTATTC 332069 Query 7865 GCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCC 7924 || || || || | ||| ||||||||| ||||||| || || Sbjct 332068 TCA--ACTTGGAAT----------GGCCATAATTTCATATCAGCTTGGACAGATTTATCT 332021 Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCT 7984 || | | || || || | ||| || || ||||| | ||| || || | ||| Sbjct 332020 GAGTAATCCCTACCAATTAAACGTTTGGCGTCAAAGATTGTATTAGCTGGAT---TGGAA 331964 Query 7985 GT---TTGGTTCTTCGCCGCGTCCCCGATAAGACGTT---CATTATTTTCCGTAAACGCG 8038 || ||| || || || | || || |||||||||| || || || ||||| || Sbjct 331963 GTAAGTTGATTTTTGGCAGAATCACCAATAAGACGTTCACCAGAATCTTGGGTAAAAGCA 331904 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 || || ||||| || | ||||| ||||| || || |||||||| || || || | ||| Sbjct 331903 ACATATGATGGTGTAATCCGATTACCTTGATCATTGGCAATAATCTCAACACGTCCATTT 331844 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | | || || ||||| || || || ||||| || ||||||||||| Sbjct 331843 TTGTAAACACCAACGCATGAGTAAGTAGTTCCCAAGTCAATACCGAT 331797 Score = 165 bits (182), Expect = 1e-35 Identities = 390/580 (67%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644 |||| || ||||| | || ||| ||||||||||||| || | ||| | |||| Sbjct 333348 ACTTCTCAGCATCATTGATCATACGTTCAATGTCTTCTGGAGAAAGTCTGTTTTGGTCAT 333289 Query 6645 TCGTAATCGTAATCTT-TTCGGATTTACCC-GAGGCCTTATCTTCAGCACTTACATTCAA 6702 | ||||| || ||||| ||| || | || | ||||||| ||||| ||| | | Sbjct 333288 TTGTAATTGTGATCTTATTCT--TTGATCCTGTTCCCTTATCCTCAGCGGATACGTGAAG 333231 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 |||||||| |||| | ||||| | || | |||||||| ||| | || || | Sbjct 333230 GATACCATTGACATCGATCTCGAATGTGACTTCGATTTGTGGGACACCACGTGGAGCTGG 333171 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || |||||| ||||| ||||| |||| || ||| || | | | | |||||| Sbjct 333170 TGCAATACCAGTTAAGTCAAAGTTACCGAGATTGTGGTTGTCTTTAGTCATTGGACGTTC 333111 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 ||| ||||| || ||||| || || || |||||||| || || |||||||||||||| Sbjct 333110 ACCCTCATAAACATTAATAGTTACAGCTGGTTGATTGTCAGAAGCAGTTGAGAAGATTTG 333051 Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942 | |||||| | ||| || |||||||| || || | | | |||| | ||||| | Sbjct 333050 TGATTTCTTTGTTGGGATGACGGTATTTCTTGGGATGATCTTGCTCATGACTCCACCAAC 332991 Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC 7002 |||||| | ||||||| || || | || | ||||| ||| || ||||| || Sbjct 332990 AGTTTCAATACCAAGAGTAAGTGGATTAACAT-CAAGAAGGACAATTCCTGAAC---TT- 332936 Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 || |||| || | | || | |||| || | || || || || || |||||||| Sbjct 332935 -TTATCTTCTCCTGAAATGACACCACCTTGTACAGCAGCACCATAAGCTACAGCCTCATC 332877 Query 7063 GGGGTTAAT-CGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121 || || || | | || | ||||||||||||| || | || | | |||||| | Sbjct 332876 TGGATTGATACCTCTTGAT-GGTTCTTTACCGTTGAAGAATTCTTTGATGAGTTGTTGGA 332818 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| || || || || ||||||||||| | |||||| || Sbjct 332817 CTTTTGGAATACGAGTTGATCCACCGACAAGAACGATCTC 332778 >seq233 Length=3140 Score = 161 bits (178), Expect = 1e-34 Identities = 1169/1857 (63%), Gaps = 84/1857 (5%) Strand=Plus/Plus Query 104355 TTTACTTCGAAGGTAATACATACCCGTTTTTAAACCAGTTTTCCACGCGTACATGTGCAT 104414 |||| ||| | ||||||||| ||||||||||| ||| |||||| ||| | ||||| Sbjct 875 TTTAGTTCTTAAGTAATACATCCCCGTTTTTAATCCACGTTTCCAACCGTGGAAATGCAT 934 Query 104415 AGACGAAAGTTTTGAAATTGTTGGACTCTCGACGAATAAGTTCATACTTTGACTTTGGTC 104474 ||| | ||| | || ||| || |||| | || | | ||| ||| || Sbjct 935 AGAACTACAAATTGCATATGATGGTCTAGCGACATGGAGATTAAGAGATTGTGATTGATC 994 Query 104475 TATATACACACCTCTATCCGCCGCCATATCGATGATTGTTTTTTGACTCATTTCCCATAC 104534 ||| | |||| | ||| || ||||| || || || ||| || ||||||||||| Sbjct 995 AATAAAAGCACCACGATCAGCAGCCATCTCAATAATATCTTTCTGGGAGATTTCCCATAC 1054 Query 104535 GGTTTTATACAATTCCTTAAGATCATCGGGTATATCAATAATGTTTTGAACAGACCCATT 104594 |||||||| | ||| |||| | || |||||| || | || || || | ||| ||||| Sbjct 1055 AGTTTTATAAAGTTCTTTAATACTATTGGGTATTTCTTTTATATTCTGGATAGATCCATT 1114 Query 104595 TGCCTTCACC-ATAAGATCTTTCATT--TCCTTC-GACCAGAGTCCACGTTCTTTCAAAT 104650 ||| | || | || |||||| | |||| | ||| | | |||| | |||| Sbjct 1115 A----TCAGCTATTATTTCATTCATTAGTTCTTCAGTCCATAAGTTAAGTTCAATTAAAT 1170 Query 104651 CGTTTACTAAATGTTTGTTTACGACGACAAATTCACCCGCGAGTGTTCGTCTCAAATAGA 104710 | || | | |||| ||||| | || ||||| | || ||||| | |||| Sbjct 1171 CTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGAAAGGACACGTCTGGAGTAGA 1230 Query 104711 TATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGATGCGG 104770 |||| | ||||| ||||| | | || || || || | ||| |||| || || || | Sbjct 1231 TATTTGATGTATATGGTTCAATCGATTCATTATTACCAAGAATTTGGGCAGTTGAGGCAG 1290 Query 104771 TAGGCATAGGTGCAAGAAGAAGACTATTCATAGTTCCTTTCTTAACAAGTTTACGCATGG 104830 ||||||| || ||||| | || | | | |||||| | | || ||||| ||| Sbjct 1291 TAGGCATTGGGGCAAGTA----ACAA---AGAATTCCTTAC--ACCATGTTTA-GCAATA 1340 Query 104831 CATTC---CAATCGTATC---GACCACTAAACTT-TGGGTCTCG-ATCCCACATATCGAA 104882 ||| |||| ||||| | || |||| | | || || || ||||||||| | Sbjct 1341 TTTTCTTTCAAT-GTATCCCAGTCCCATAAATTGCTTGGCCTGACATTCCACATATCATA 1399 Query 104883 TTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAGGACCGTACATTTC 104942 |||||||| || ||| | || || || ||| | |||||||| || || | ||| Sbjct 1400 CTGAAGAATTCCCTTAGATACTGGCGATCCTTTATAAGTTTCATAGGGTCCATCGCGTTC 1459 Query 104943 GGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGAATATATCAATGTT 105002 || | ||||| || | || | | | ||||| || |||||||| || | | || Sbjct 1460 AGCCAACTCACATGAAGCCTCCAAAGCACCATGGTAAATTGTTTCGAAAATTTTCTTATT 1519 Query 105003 GAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATG-ATAAACACGTCAGCGA 105061 |||| | | | || |||| |||| || | | | | | || || | || || | Sbjct 1520 AAGTTCTTTAGCTTGAGGTGAAGTAAATGG-ATACCTCATAAGCATGAATGCATCTGCCA 1578 Query 105062 GACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCGTTTTCGG 105121 ||| |||||||||||||| || |||| ||| | |||||| || ||| | || ||| Sbjct 1579 AACCTTGAACACCAATACCTATTGGTCGGTGTCTCATATTAGATTTTTTAGC--TTCCGG 1636 Query 105122 T--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTTTCGTAAC 105179 ||||||| | || ||| |||| ||| ||||| || | || | ||||| | ||| Sbjct 1637 AACTGGGTAATAATTCACATCGATAATCTTATTTAAATTCCTGGTCAAAATTTTAGCAAC 1696 Query 105180 ACGATGTAACTCTTCATGG---TT--AAACTCGTTC----TTCTCGACATCAACGTATTT 105230 | || | || | | || |||| ||| ||||| |||||| || | Sbjct 1697 ATAGTGGAG---TTGAGTGAAATTGAAAACAGGTTTACCATTCTCTGTATCAACAAATCT 1753 Query 105231 TGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAA-ACTCCA 105289 | || || || | ||||||||||| || ||| || | | || | || | Sbjct 1754 ATTAAGAGCAATAGACCCTAGATTACATACAGCAACTTCATC-TGGTGAACAATATTCAA 1812 Query 105290 GAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTT 105349 ||| || ||||| | ||| || | || || || |||| | || || || |||||| Sbjct 1813 CAATCTCAGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTTGATT--ACTTTT 1870 Query 105350 C--ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAAT 105407 | |||||| ||||| |||| ||| || || || || ||||| | ||| | | Sbjct 1871 CCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCTGTTTCTATCTGGCTCTCACA 1930 Query 105408 AATTGCTTTCCAAAT--CTCCGAAGCTGGTACAACTTTAGTTGCGATACC--TTCAGAT- 105462 ||| || |||||| ||| || | || ||| || | || | ||| | Sbjct 1931 AATCTTTTGCCAAATAACTCT-----TGCTTTAA-TTTGCTTTCTGTAACGTTTCTCCTC 1984 Query 105463 -TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGC 105521 || ||||| ||| | | || || || | ||| | ||| ||| || Sbjct 1985 CTCATATTTAATGTATAATTTCTCGAATTCATCACCCCAACAATCTTCAAGTCCAGGACA 2044 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 | || |||||| | || ||||| | | ||| ||||| ||||||||||| ||||| Sbjct 2045 TTCATGAGGACACATTAACGACCAGTAAGAATCTTTCTCAACACGTTTCATGAATAAATC 2104 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAA 105641 |||| ||| | | | || | ||||| || ||||||| |||| ||| Sbjct 2105 AGGAACCCAAAGCCCATAGAACAAATCTCGTGCTCTTTCCTCTTCTGGACCTGTGTTCTT 2164 Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701 || || ||||| || | ||||| || ||||||||||||||||| | ||||| | Sbjct 2165 CTTAAGGTCCAGAAATTCCATGATATCAGCATGCCATGGTTCTAAATATATTGCAAATGC 2224 Query 105702 CCC------TTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCG 105755 || |||| || || ||| | ||||| | ||| || ||| | |||| Sbjct 2225 TCCGGGCCTTTTATTACCACC---TTGGTCAACATAACGTGCCGTATTATTAAAAACTCT 2281 Query 105756 TAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGC 105815 ||||||||||| | |||| |||||| |||||||| |||| |||| ||| ||| || Sbjct 2282 CAACATTGGAATTAATCCATTGGATGTCCCATTTGTCCCACCAATAAATGAACCATTAGC 2341 Query 105816 ACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTC 105875 | | | ||||| | ||| || ||||| || || | || ||| || || | Sbjct 2342 CCTAATACAATGAACATTTAAACCGATACCACCTGCAGATTTCGAGATCAAAGCGCATTG 2401 Query 105876 TTTTACTGTATCGTAAATACCGTCGATACTATC----TTCCTTATTCGCAATCAGGAAAC 105931 ||| | ||| |||||||| || || ||| ||| | || || |||| ||||| Sbjct 2402 TTTCAGTGTGTCGTAAATTCCTTCTATAGAATCACCGGCCATTGTTAGCAA----GAAAC 2457 Query 105932 ACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGA 105991 | || |||| ||| |||| || || ||||| || | |||||| | || ||| | | Sbjct 2458 ATGAAGACAGTTGGGGTCGCCTAGTTCCCGCATTAAATAAAGTTGGGGAAGCGTGAGTAA 2517 Query 105992 ACAAACCTTTCGATAACGCT--TCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATG 106049 || | |||| || | | || || || || | || | ||||| | ||| || Sbjct 2518 ACCA--CTTTTGAGACATATAGTCATAAGTCTCAATAACAGAACTTATATCTTCTCCGTG 2575 Query 106050 AATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCAATAATTTCACCGTCAAT 106109 ||| |||| || || ||||| | | || ||| ||| | || ||||| || || || Sbjct 2576 AATCCCAACCGCAACACGCATCAATAAATGTTGAGGTCTCTCGGCAATTTTCCCATCTAT 2635 Query 106110 TTTCTGGAGATACCCTTTTTCAAGTGTTTTTAAACCAAAATACCCAAACTCAAAATC 106166 || ||||| || | || || ||||| ||||| ||| |||||||| Sbjct 2636 CTTTAAAAGATAGGAACGCTCCAAAGTCTTGAAACCGAAATAAGAAAAGTCAAAATC 2692 >seq20 Length=639589 Score = 105 bits (116), Expect = 8e-18 Identities = 197/283 (70%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| |||||||| || || || ||| || || || | ||| ||||||||||| || Sbjct 588607 ATCAAAATCTTCTCCTCCTAAAAATGTGTCTCCGTTAGTTGATTTAACTTCAAAGATTCC 588666 Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | || | || || || || | ||| || ||||||||||| || || | | || | Sbjct 588667 TTTTTGTAA-TTCAAGGACAGAGATATCGAATGTACCACCACCAAGATCGTATAC-AGCA 588724 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| | ||| || |||||||| || | ||| || || ||||||| Sbjct 588725 A-----TAATTTTGTCATCAGACTTCTCAAGACCGTAAGCCAAAGCAGCAGCTGTTGGTT 588779 Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 |||| |||| || || |||| || | |||||||| ||| | ||||| || || |||||| Sbjct 588780 CATTGATAACACGGAGGACA-TTTAATCCAGCAATTGTTCCGGCATCCTTTGTAGCTTGT 588838 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | ||| |||||||| ||||| || || || || | ||| |||| Sbjct 588839 CTTTGGGAATCGTTGAAGTAAGCTGGTACTGTGATGACGGCGT 588881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128139713080