Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq233 165 1e-35 seq1 96.9 4e-15 seq16 87.8 2e-12 >seq233 Length=3140 Score = 165 bits (182), Expect = 1e-35 Identities = 875/1386 (63%), Gaps = 35/1386 (3%) Strand=Plus/Minus Query 111624 TTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATAC 111683 || ||||| || ||| | || || || || |||||||| ||||||| | ||||| || Sbjct 2599 TTGATGCGTGTTGCGGTTGGGATTCACGGAGAAGATATAAGTTCTGTTATTGAGACTTAT 2540 Query 111684 GACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGG 111739 ||| | ||||| | ||||| | ||| ||| | ||||| | || || || || Sbjct 2539 GACTATATGTCTCAAAAGTGGTTTACTCA----CGCTTCCCCAACTTTATTTAATGCGGG 2484 Query 111740 TACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG----GATTCAA 111795 || |||||||| |||| |||||| |||| ||||| | ||||| | Sbjct 2483 AACTAGGCGACCCCAACTGTCTTCATGTTTC----TTGCTAACAATGGCCGGTGATTCTA 2428 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 | | || ||||||| ||| || | |||| || ||||| || | || ||||||| Sbjct 2427 TAGAAGGAATTTACGACACACTGAAACAATGCGCTTTGATCTCGAAATCTGCAGGTGGTA 2368 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTC 111915 |||| | | | ||| | | || || || || |||| | || |||||||| Sbjct 2367 TCGGTTTAAATGTTCATTGTATTAGGGCTAATGGTTCATTTATTGGTGGGACAAATGGGA 2308 Query 111916 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACC 111975 ||| |||| | ||||||||| | | || ||||| || || || ||||| ||| Sbjct 2307 CATCCAATGGATTAATTCCAATGTTGAGAGTTTTTAATAATACGGCACGTTATGTTGACC 2248 Query 111976 AAGCTGGGCGTCGCAAG---GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 112032 ||| ||| | | | ||| | | ||| | ||| | || |||||||| || |||| Sbjct 2247 AAGGTGGTAATAAAAGGCCCGGAGCATTTGCAATATATTTAGAACCATGGCATGCTGATA 2188 Query 112033 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATC 112092 ||||||| || || || | ||| |||| || |||| | || ||| Sbjct 2187 TCATGGAATTTCTGGACCTTAAGAAGAACACAGGTCCAGAAGAGGAAAGAGCACGAGATT 2128 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | |||| | || ||| |||| ||| | |||||||| | |||||| | | | | Sbjct 2127 TGTTCTATGGGCTTTGGGTTCCTGATTTATTCATGAAACGTGTTGAGAAAGATTCTTACT 2068 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 |||| | | ||||| | | || || || ||| |||||| || || | Sbjct 2067 GGTCGTTAATGTGTCCTCATGAATGTCCTGGACTTGAAGATTGTTGGGGTGATGAATTCG 2008 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGC--GACTGCGACGGTGCCAGCTGC 112270 | | |||| || || ||||| || | || || || | | ||| Sbjct 2007 AGAAATTATACATTAAATATGAGGAGGAGAAACGTTACAGAAAGCAAA--TTAAAGCAAG 1950 Query 112271 CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTA 112330 | | | ||| || ||| || || | || || || ||||| || ||| |||| Sbjct 1949 AGTTATTTGGCAAAAGATTTGTGAGAGCCAGATAGAAACAGGCACACCTTACATGGTTTA 1890 Query 112331 CAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAA 112390 ||||| ||||| | || ||||||||| | ||| | || |||||| |||| || Sbjct 1889 TAAAGATCATTGTAATCGGAAAAGTAATCAACAAAATCTTGGAACTATCAAGTGTTCTAA 1830 Query 112391 CCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCG 112449 |||||||| || || | |||| || || | ||||| ||||| ||||| || | Sbjct 1829 TCTCTGTACTGAGATTGTTGAATATTGTTCACCA-GATGAAGTTGCTGTATGTAATCTAG 1771 Query 112450 CATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT---ATGAAA 112506 || || ||||| | | ||| ||| |||||| | | || || || | Sbjct 1770 GGTCTATTGCTCTTAATAGATTTGTTGATACAGAGAATGGTAAACCTGTTTTCAATTTCA 1711 Query 112507 ---AACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 |||||||| | ||| | |||| | | || | || |||| | |||| ||| | Sbjct 1710 CTCAACTCCACTATGTTGCTAAAATTTTGACCAGGAATTTAAATAAGATTATCGATGTGA 1651 Query 112564 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 112623 ||| |||||| ||| | ||| |||||||||||||||||||| ||||| ||| | | Sbjct 1650 ATTATTACCCAGTTCCGGAAGCTAAAAAATCTAATATGAGACACCGACCAATAGGTATTG 1591 Query 112624 GTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 112683 |||| |||||| | || |||| |||||| ||| | | ||||| ||| ||| Sbjct 1590 GTGTTCAAGGTTTGGCAGATGCATTCATGCTTATGAGGTATCCATTTACTTCACCTCAAG 1531 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | || ||| | ||| | || || || ||||| || || | ||| | ||||| | Sbjct 1530 CTAAAGAACTTAATAAGAAAATTTTCGAAACAATTTACCATGGTGCTTTGGAGGCTTCAT 1471 Query 112744 CGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 112803 |||||||| || ||||| || |||||||| | | | || || |||| || | | Sbjct 1470 GTGAGTTGGCTGAACGCGATGGACCCTATGAAACTTATAAAGGATCGCCAGTATCTAAGG 1411 Query 112804 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC--TTCACTACGACTGGGACGC 112861 | | ||||| | |||||||| |||| || || |||||| || | | |||||||| | Sbjct 1410 GAATTCTTCAGTATGATATGT-GGAATGTCAGGCCAAGCAATTTA-TGGGACTGGGATAC 1353 Query 112862 TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCC 112921 | || ||| || | | ||| | | || | | || | || |||||||| Sbjct 1352 ATTGAAAGAAAATATTGCTAAACATGGTGTAAGGAATTCTTTGTTACTTGCCCCAATGCC 1293 Query 112922 AACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAA 112981 || ||||| || || ||||| | ||||||||||||| ||||||| || || | || Sbjct 1292 TACTGCCTCAACTGCCCAAATTCTTGGTAATAATGAATCGATTGAACCATATACATCAAA 1233 Query 112982 CATCTA 112987 ||||| Sbjct 1232 TATCTA 1227 >seq1 Length=5851329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 176893 ATCACGAACATTCTTACACTTC-CCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAA 176951 |||||| |||||| ||| || |||||||| || || || || |||| ||| || |||| Sbjct 3119066 ATCACGTACATTCA-ACATTTTACCACGAAGTGGAAATACTCCATAGTAATCACGTCCAA 3119124 Query 176952 CCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTG 177011 | || ||||| | ||| || | ||||| || ||||| ||||| || | ||||||| Sbjct 3119125 CAACGCCAAGACCAGAAACTGCCAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTG 3119184 Query 177012 TACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAG 177071 |||| |||| || | | ||||| |||| || ||||| || | ||| || ||||| Sbjct 3119185 TACATTTGCAGGAATTTTTTGTACCAGCCTCATTAGCATCCTCAAGTTTTGGTATACCTT 3119244 Query 177072 TAA-TTTTG--GACTT 177084 ||| ||||| ||||| Sbjct 3119245 TAACTTTTGTTGACTT 3119260 >seq16 Length=715404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 176893 ATCACGAACATTCTTACACTTC-CCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAA 176951 ||| || |||||| ||| || |||||||| ||||| || || || | ||| || || | Sbjct 673888 ATCGCGTACATTCA-ACATTTTACCACGAAGTGGGAATACTCCATAATAATCACGTCCTA 673946 Query 176952 CCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTG 177011 | ||| ||||| | ||| || | ||||| || ||||| ||||| || | ||||||| Sbjct 673947 CAACACCAAGACCGGAAACTGCTAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTG 674006 Query 177012 TACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAG 177071 |||| ||| || | | ||||| |||| || ||||| || | ||| || ||||| Sbjct 674007 TACATTTGTAGGAATTTTTTGTACCAGCCTCATTAGCATCCTCAAGTTTTGGGATACCTT 674066 Query 177072 TAATTTT 177078 ||| ||| Sbjct 674067 TAACTTT 674073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737845302640