Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq233 105 8e-18 seq1 96.9 4e-15 seq16 87.8 2e-12 >seq233 Length=3140 Score = 105 bits (116), Expect = 8e-18 Identities = 347/535 (65%), Gaps = 11/535 (2%) Strand=Plus/Plus Query 110607 CTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACG 110666 |||||| | |||||||| | ||||||| ||| | | | |||| | || || | Sbjct 2081 CTCAACACGTTTCATGAATAAATCAGGAACCCAAAGCCCATAGAACAAATCTCGTGCTCT 2140 Query 110667 AGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 ||||||| |||| ||| || |||| ||| ||||||||||| | ||||| Sbjct 2141 TTCCTCTTCTGGACCTGTGTTCTTCTTAAGGTCCAGAAATTCCATGATATCAGCATGCCA 2200 Query 110727 TGGTTCGAGATAGACAGCGATGGATCC---CTTACGACGACCCGCCTGGTTAACATAGCG 110783 |||||| | ||| | || | | ||| | | | ||| | |||| |||||| || Sbjct 2201 TGGTTCTAAATATATTGCAAATGCTCCGGGCCTTTTATTACCACCTTGGTCAACATAACG 2260 Query 110784 TGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC 110843 ||| || ||| || || || | ||| ||||| | ||||| |||| |||||||| || Sbjct 2261 TGCCGTATTATTAAAAACTCTCAACATTGGAATTAATCCATTGGATGTCCCATTTGTCCC 2320 Query 110844 CCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCA 110903 | ||| || ||| || | ||| || | || | ||| |||||||| || | Sbjct 2321 ACCAATAAATGAACCATTAGCCCTAATACAATGAACATTTAAACCGATACCACCTGCAGA 2380 Query 110904 CTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT---GC 110960 || || || || | | | ||||| | ||||| || || || ||||| || Sbjct 2381 TTTCGAGATCAAAGCGCATTGTTTCAGTGTGTCGTAAATTCCTTCTATAGAATCACCGGC 2440 Query 110961 C-TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGA 111019 | ||||| |||| |||| || ||||||| || || || ||||||||||| || | Sbjct 2441 CATTGTTAGCAA---GAAA-CATGAAGACAGTTGGGGTCGCCTAGTTCCCGCATTAAATA 2496 Query 111020 GTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG 111079 || || | || ||| | ||| ||| ||||| | || || || || | | | Sbjct 2497 AAGTTGGGGAAGCGTGAGTAAACCACTTTTGAGACATATAGTCATAAGTCTCAATAACAG 2556 Query 111080 AGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 | || ||||| |||||||| |||| ||||| ||||| || | || |||||| Sbjct 2557 AACTTATATCTTCTCCGTGAATCCCAACCGCAACACGCATCAATAAATGTTGAGG 2611 >seq1 Length=5851329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| ||||||||||| ||||| | ||| | || || ||| ||||||| || Sbjct 3119085 TTACCACGAAGTGGAAATACTCCATAGTAATCACGTCCAACAACGCCAAGACCAGAAACT 3119144 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || | ||||| |||||||| ||||| || | ||||||||||| || | || | | Sbjct 3119145 GCCAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTGTACATTTGCAGGAATTTTTT 3119204 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 |||||||| | || ||||| || | ||| || ||||| Sbjct 3119205 GTACCAGCCTCATTAGCATCCTCAAGTTTTGGTATACC 3119242 >seq16 Length=715404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| ||||| ||||| ||||||| ||| | || || || ||||| | || Sbjct 673907 TTACCACGAAGTGGGAATACTCCATAATAATCACGTCCTACAACACCAAGACCGGAAACT 673966 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || | ||||| |||||||| ||||| || | ||||||||||| || || | | Sbjct 673967 GCTAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTGTACATTTGTAGGAATTTTTT 674026 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 |||||||| | || ||||| || | ||| |||||||| Sbjct 674027 GTACCAGCCTCATTAGCATCCTCAAGTTTTGGGATACC 674064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971678388600