Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=5851329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || ||||| || ||||| || ||||||| |||||||||||| ||| ||||| | || Sbjct 3119085 TTACCACGAAGTGGAAATACTCCATAGTAATCACGTCCAACAACGCCAAGACCAGAAACT 3119144 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 || | ||||| |||||||| ||||| || | |||||| ||||| || | || | Sbjct 3119145 GCCAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTGTACATTTGCAGGAATTTTTT 3119204 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAA-TTTTG--GACTT 169534 ||||| |||| || || || || | || || ||||| ||| ||||| ||||| Sbjct 3119205 GTACCAGCCTCATTAGCATCCTCAAGTTTTGGTATACCTTTAACTTTTGTTGACTT 3119260 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||| || ||||||||||||||||| | ||||||||| || || Sbjct 4933975 GCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCA 4933916 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | || |||||||| | ||| | || || ||| ||||| ||||||||||| || Sbjct 4933915 GGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCA-AATGAACCGGAGAAGAATAT 4933857 Query 117393 ACCCTCCACACACGCAAACGCAA 117415 ||||| ||| || || |||| Sbjct 4933856 TCCCTCAACAGCTGCGAAAGCAA 4933834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976471015880