Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq220 569 5e-158 >seq220 Length=3625 Score = 569 bits (630), Expect = 5e-158 Identities = 802/1118 (72%), Gaps = 35/1118 (3%) Strand=Plus/Plus Query 32227 TTCAGCGATGAGCAGATCGAGAAGCTCAACGACGCGTTCCTCGAATCGATCTTCGACTAT 32286 |||| |||||| ||||| |||||||| | || |||| || || ||| |||| Sbjct 2499 TTCACCGATGAACAGATTGAGAAGCTGGAAGAGATTTTCCATTCCTCCATGTTCAACTAC 2558 Query 32287 CAGCGCAACTGGTATCGCGCCGGCTTCAAGGAACGGATCCGCAACGTCCTGAAGAGCCGG 32346 |||||| |||||| ||||| | | || ||||||||| | |||||| || Sbjct 2559 CAGCGCCACTGGTGGGAAGCCGGAAAAACCAACCGCATCCGCAACCTGCTGAAGTCACGC 2618 Query 32347 CAGATCGGCGCGACCTGGTACTTCGCGCGCGAGGCGTTGCTCGACGCGCTGAACACAGGC 32406 |||||||||||||||| ||||| || || || || || | ||||| ||| || || Sbjct 2619 CAGATCGGCGCGACCTTTTACTTTGCCCGTGAAGCCCTGATTGACGCCCTGCTTACCGGA 2678 Query 32407 CGCAATCAAATCTTCCTGTCGGCCAGCAAGGCACAGGCGCACGTGTTCCGCCAGTACATC 32466 || || || || ||||| || ||||| ||||||||||| ||||| || ||||||||| Sbjct 2679 CGTAACCAGATTTTCCTTTCTGCCAGTAAGGCACAGGCTCACGTTTTTAAGCAGTACATC 2738 Query 32467 GTGCAGTTCGCGAAAGACGCGGTCGACGTCGAGCTGAAGGGCGACCCGATCGTGCTGCCG 32526 | | ||||| ||||| | |||| || |||||||| ||||| ||||| ||||| || Sbjct 2739 ATCGACTTCGCCAAAGAAG---TCGAGGTGGAGCTGAAAGGCGATCCGATGGTGCTTCCT 2795 Query 32527 AACGGTGCGACGCTGTACTTCCTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGGC 32586 ||||| || ||||| ||||||||||||||||| || ||||| || ||||||||| |||| Sbjct 2796 AACGGAGCCACGCTTTACTTCCTCGGCACCAATGCCCGCACCGCCCAGAGCTACACCGGC 2855 Query 32587 AACCTGTATTTCGACGAGTACTTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGCC 32646 || |||||| | || ||||| |||||| | ||| |||||||| |||||||| || || Sbjct 2856 AATCTGTATCTGGATGAGTATTTCTGGATACCGAAATTCCAGGAACTGCGCAAAGTGGCT 2915 Query 32647 TCCGGCATGGCGATTCACGACCAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCCTC 32706 ||||| ||||| |||||| | | ||||| || || ||||| || ||||| || ||||| Sbjct 2916 TCCGGTATGGCTATTCACAAAAAATGGCGACAAACCTATTTTTCCACGCCATCCAGCCTG 2975 Query 32707 GCGCACGACGCTTATCCGTTCTGGTCGGGCAAGCTGTTCAACCGTGGCCGACCGAAAGAT 32766 | ||| ||||||||||||||||| || ||||||||||||||| || |||| Sbjct 2976 ACCCACAGTGCTTATCCGTTCTGGTCCGGTGCGCTGTTCAACCGTGGGCGCAACAAAGCC 3035 Query 32767 CAGCACGTATCGATCGACATTTCGCACGCGGCGCTGGCCGCGGGCCGTTCGTGTCAGGAC 32826 | | || |||||| | || ||| |||||| | |||| ||| ||| Sbjct 3036 GATAAGGTGGACATCGACCTGTCCCACAGCAATCTGGCCCCCGGCCTGCTGTGCGCAGAC 3095 Query 32827 GGCCAGTGGCGCCAGATCGTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAACAGCGGG 32886 || || | |||||||| ||||| || || || || ||||||||||| || ||| Sbjct 3096 GGGCAATACCGCCAGATAGTCACCGTGGAAGATGCAGTGCGCGGCGGATGTAAC------ 3149 Query 32887 GCGCGGCCGCTCTTCAATCTCGACCGGCTACGACTGGAATACAGCCCCGAGGAATACGCG 32946 || ||| | || |||| | | || |||| |||||||| | |||||| | Sbjct 3150 ---------CTTTTCGACCTTGACCAGTTGCGCATGGAGTACAGCCCGGCCGAATACCAG 3200 Query 32947 AACCTGCTGCTGTGCCAGTTCATCGACGAT-TCGCTGTCGGTTTTCCCGCTGACGGTGTT 33005 ||||||||| ||||| |||| | |||||| |||| ||| || |||||||| | | | | Sbjct 3201 AACCTGCTGATGTGCGAGTTTGTGGACGATCTCGC-GTCCGTATTCCCGCTCAGCGAGCT 3259 Query 33006 GCAGCCGTGCATGGTCGATACCTGGGAGGTGTGGGACGACTTCAAGCCACTGTACCTGCG 33065 |||| |||||||||| || | |||||| || ||| |||||| | ||||| ||||| Sbjct 3260 GCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGACTTTCATGCACTGGCTCTGCG 3319 Query 33066 CCCGTTCGGC-GACGAGGAGGTCTGGATCGGCTACGACCCGTCGCA---TACG------G 33115 |||||| ||| | || || || |||||||| || |||||| || | |||| | Sbjct 3320 CCCGTTTGGCTGGCG-CGAAGTGTGGATCGGTTATGACCCGGCGAAAGGTACGCAAAACG 3378 Query 33116 GCGACAGCGCCGGCTGCGTGGTGATTGCGCCGCCGAAGCGT-CCGGGCGGGAAGTTCCGC 33174 ||||||||||||| ||||||||| | || ||||| | ||| |||||||| ||||||||| Sbjct 3379 GCGACAGCGCCGGATGCGTGGTGGTGGCACCGCC-AGCCGTGCCGGGCGGTAAGTTCCGC 3437 Query 33175 GTGCTCGAGCGGTTCCAGTGGCACGGTTTGGACTTCGAGGCGCAGGCCG-CGCAAATCGA 33233 | || ||||| |||||||| ||| |||||||| || ||||| | ||| ||| | Sbjct 3438 ATTCTTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGCGCCCAGGCTGACGC-CATCAA 3496 Query 33234 AGCGCTGACGCGGCGCTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCA 33293 | ||||| | || ||||||||| |||||||| ||| ||||||| | || || Sbjct 3497 AAAACTGACCGAACAGTACAACGTGACCTATATCGGCATCGACTCGACCGGCGTTGGTCA 3556 Query 33294 GGGCGTGTATCAGCTCGTCACGAAGTTTTTCCCGGCCG 33331 || || || || ||| | |||||| || |||| Sbjct 3557 CGGGGTTTACGAGAACGTGAAAGCGTTTTTTCCTGCCG 3594 Score = 147 bits (162), Expect = 5e-31 Identities = 254/367 (69%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 29903 TCCTCGATCACGTACGCATCGTTCGAGCTTTCGAAGTTCTCGATGCGATCGCGCTTCGGG 29962 ||||| | ||| || || ||||| | ||| ||||| || || || || || |||||| Sbjct 143 TCCTCAACCACATAGGCTTCGTTAACGGATTCAAAGTTTTCAATCCGGTCACGTTTCGGG 202 Query 29963 TTGTCGATGAGCGCGCGACGGCGCGCACCGATTTGCCAGTACAGCGACAGGTTGTCCAGG 30022 |||||||| | || || ||||| | | |||||||| | |||||||| ||||| Sbjct 203 TTGTCGATAACCGAACGGCGGCGGGTGTCCTCCTGCCAGTAAATGGACAGGTTATCCAGA 262 Query 30023 CGCGTGATCATCAGCGCGCGCGGGGGGAAGTACGGCACGCGCACGGCCGGCAGATTGCCG 30082 || ||||||| |||||| ||| |||||| ||||| | ||||||||| |||| || Sbjct 263 CGGGTGATCAGCAGCGCATTCGGCGGGAAGAACGGCGCACGCACGGCCTGCAGGCCACCC 322 Query 30083 ATGCGCTTCTGCGCCGTGATGACGTCCGCGGCGAGCGCTTCGGTCGGCGGCTGATCCTTG 30142 ||||| ||||| |||| | || || || || ||| | ||| || ||| Sbjct 323 ATGCGTTTCTGACTGATGATCATATCGGCAGCCAGTTTTTCACTGTTTTCCTGGTCTTTG 382 Query 30143 TTCACGACCGGGAAATACTTGTCCTGCAGCAGCTCGCGGCCGCAGATCACGACGAGATTC 30202 || || | ||||||||||||||| ||||||||| || || || ||||| || |||| Sbjct 383 TTGACCAGCGGGAAATACTTGTCAGACAGCAGCTCACGACCACAAATCACCACCAGATCG 442 Query 30203 GGATCCTCGACGT--ACCACGGCTCGAGCAGTTCGTTGTTCGCGAGCGTGACGACGGCGT 30260 ||| || || |||||| |||| || || ||| || | | || ||||||| Sbjct 443 TCATCGTCCTGGTAGACCACG--TCGATAAGCTCATTGACGGCATCCATCACCACGGCGT 500 Query 30261 CAAGGTT 30267 | ||||| Sbjct 501 CCAGGTT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119032770261412