Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq220 304 3e-78 >seq220 Length=3625 Score = 304 bits (336), Expect = 3e-78 Identities = 662/981 (67%), Gaps = 29/981 (3%) Strand=Plus/Plus Query 28894 CGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCGCACGCGAGGCATTC 28953 ||||| | ||||||||||| ||||||||||| |||| || || || || || || | Sbjct 2598 CGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAAGCCCTG 2657 Query 28954 GTCGACGCGCTCGATACCGGCCGCAACCAGATTTTTCTATCGGCCAGCAAAGCACAGGCG 29013 | ||||| || |||||| || ||||||||||| || || ||||| || |||||||| Sbjct 2658 ATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCACAGGCT 2717 Query 29014 CACGTCTTCAAACAGTACATCGTGCAGTTCGCTCGTGACGTGGCCGACGTTGAGCTGACG 29073 ||||| || || ||||||||| | | ||||| || || ||| || ||||||| Sbjct 2718 CACGTTTTTAAGCAGTACATCATCGACTTCGCCAAAGAAGT---CGAGGTGGAGCTGAAA 2774 Query 29074 GGCGATCCGATCATTCTGCCGAACGGTGCGACGCTGTACTTCCTAGGGACGAACTCGCGC 29133 ||||||||||| | || || ||||| || ||||| |||||||| || || || | ||| Sbjct 2775 GGCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTACTTCCTCGGCACCAATGCCCGC 2834 Query 29134 ACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATATTTCTGGGTGCCGAAGTTC 29193 ||||| ||| || |||||||||||| | || || ||||||||| | ||||| ||| Sbjct 2835 ACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGATACCGAAATTC 2894 Query 29194 CGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGCGGCTGACCTAC 29253 | || ||| | || || || || ||||| || |||||| ||||| | ||||| Sbjct 2895 CAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGCGACAAACCTAT 2954 Query 29254 TTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCGGCGCCGATG-C 29312 || |||||| || || |||||| || || |||||||| ||| | || || Sbjct 2955 TTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTG-CGCTGTT 3013 Query 29313 GAATCGTGGGCGCGCGCCTAG-CGATCGTATCCAGATCGACACGAGCCACGAAGC--GCT 29369 || ||||||||| | || |||| | | |||||| | |||| ||| || Sbjct 3014 CAACCGTGGGCGC-AACAAAGCCGATAAGGTGGACATCGACCTGTCCCAC--AGCAATCT 3070 Query 29370 CGTGCGAGGCATGCTGGGCGAGGACGAGCAGTGGCGTCAGATCGTCACCGTACTCGATGC 29429 | | ||| ||||| ||| |||| ||| | || ||||| |||||||| ||||| Sbjct 3071 GGCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGATGC 3130 Query 29430 GATCGAGGGCGGCTGCGACTTGTTCGACCTGGAGAGACTTCGGCGCCG-GTACAGTGCAG 29488 | ||||| || || | |||||||| || | || || | |||||| | | Sbjct 3131 AGTGCGCGGCGGATGTAACCTTTTCGACCTTGA-CCAGTTGCGCATGGAGTACAGCCCGG 3189 Query 29489 AGGCTTTCGCGAACCTGCTGATGTGCCAGTTCATCGACGATTCGGTGTCGGTGTTCAAGC 29548 | | | |||||||||||||||| |||| | |||||| | ||| || ||| || Sbjct 3190 CCGAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGCGTCCGTATTCCCGC 3249 Query 29549 TGGCCGAGCTGCAGCGCTGCATGGTCGACTCGTGGGAGGAATGGGCCGACGACTTCTCGC 29608 | |||||||||| |||||||| ||| ||||| | ||| ||||| ||| || Sbjct 3250 TCAGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGAC--TTTCATGC 3307 Query 29609 NNNNNNNNNNNCGTCCGTTCGGCTATCGCGAGGTGTGGGTTGGCTACGATCCGG------ 29662 || ||||| |||| ||||| |||||| | || || || |||| Sbjct 3308 -ACTGGCTCTGCGCCCGTTTGGCTGGCGCGAAGTGTGGATCGGTTATGACCCGGCGAAAG 3366 Query 29663 ---CGCTGACTGGCGACTCAGCCGGTCTCGTTGTCGTGGCGCCGCC--GCGTGTCGAGGG 29717 ||| | |||||| ||||| ||| || ||||| ||||| |||| | ||| Sbjct 3367 GTACGCAAAACGGCGACAGCGCCGGATGCGTGGTGGTGGCACCGCCAGCCGTGCC--GGG 3424 Query 29718 TGGGACGTTCCGCGTGCTCGAACGTCACCAGTTCCGCGGCAACGACTTCGAGGAACAGGC 29777 || | ||||||| | || || |||||||||| ||||| | |||||| | ||||| Sbjct 3425 CGGTAAGTTCCGCATTCTTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGCGCCCAGGC 3484 Query 29778 CGCGGCGATCGAACAGATCACGCAGCGCTACAACGTCGGCTATATCGCGATCGACACGAC 29837 | || ||| || | | || | | |||||||| |||||||| |||||| |||| Sbjct 3485 TGACGCCATCAAAAAACTGACCGAACAGTACAACGTGACCTATATCGGCATCGACTCGAC 3544 Query 29838 GGGCATGGGGCAGGGCGTCTA 29858 ||| | || || || || || Sbjct 3545 CGGCGTTGGTCACGGGGTTTA 3565 Score = 214 bits (236), Expect = 5e-51 Identities = 627/951 (66%), Gaps = 54/951 (6%) Strand=Plus/Plus Query 26420 CTCGATGTTTTCCGCGAC-GCAGCCGCAACCGAAGTCTTCGACGACATACGCGTCGTTCG 26478 || |||||||||| | | || || ||| | | |||| || || ||||| || ||||| Sbjct 109 CTGGATGTTTTCCACCAGTGCTGC-GCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAA 167 Query 26479 ACGATTCGTAGTTCTCGATTTGGTCGCGCTTCGGGTTGTCGATCAGCGAGCGACGGCGCG 26538 ||||| |||| || || |||| || |||||||||||||| | ||| || ||||| | Sbjct 168 CGGATTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAACCGAACGGCGGCGGG 227 Query 26539 CACCTTCCTGGAAGTAGATCGACAGGTTCTCCAGCTTCGTCACCATCATCGCGCGCTTCG 26598 | ||||| |||| || |||||||| ||||| || | || || ||| | || Sbjct 228 TGTCCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCG 287 Query 26599 GGAAGAACGGCACACGCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTGACGATCAGGT 26658 ||||||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||| | Sbjct 288 GGAAGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATAT 347 Query 26659 CGGCCGCGAGCTGCTCGGTCGGTGCCTGCGTC-GTGTTGACGATCGGGAAATACTTGTCG 26717 |||| || || | || | | |||| ||| ||||||| | ||||||||||||||| Sbjct 348 CGGCAGCCAGTTTTTCACTGTTTTCCTG-GTCTTTGTTGACCAGCGGGAAATACTTGTCA 406 Query 26718 TGCAGCAGCTCGCGGCCGCAGATCACAACGAGCCCCGTGTCTTCCTGG--AACCACGGGT 26775 ||||||||| || || || ||||| || || | || |||||| ||||| || Sbjct 407 GACAGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCAC--GT 464 Query 26776 CGA-----TCATCGACGACACGATGTCCATCACGAGCGCGTCGAGGTTCACGTAGTCGCC 26830 ||| |||| |||| || |||||||| | ||||| ||||| | || || || Sbjct 465 CGATAAGCTCATTGACGGCA-----TCCATCACCACGGCGTCCAGGTTGGCATATTCTCC 519 Query 26831 GCCCTTACCGAC-----GAGCACCTTGCCGGCTTCCTTCGCACCT--TCGTGCAGC---- 26879 || || ||||| ||||| | | || | ||| | | | |||| || Sbjct 520 ACCTTTCCCGACTTTCACCGCACCCGGTGTGGTTTCACCGCCCGTGGTGGTGCTGCCCAT 579 Query 26880 -ACGCGATGCCCGGCGC--GGTCGCGATACTGTTGCAGCCAACCGATGTTCACGTCCTGC 26936 ||| ||| |||| || || || | |||||||| || ||||||| |||||| Sbjct 580 GACGTGAT--CCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGC 637 Query 26937 AACAGCGGG--TTCGCTGCTTTGTCCGTCGACAGTGCCGC---CTTTACGCCGTTCCAGC 26991 | ||||||| |||||| | | | || | ||| ||| |||||||| ||| Sbjct 638 AGCAGCGGGTTTTCGCTACGGT-----TAGAGGTTTTCGCACGCTTCACGCCGTTAAAGC 692 Query 26992 CGATCATGATCCGGTCGAGCG-CAGACTGGTTGAGGATCACATTGCGGATGCGTTGCTGG 27050 |||||||||| ||||| |||| | ||| | || | ||| | || ||||| || ||||| Sbjct 693 CGATCATGATGCGGTCCAGCGCCTGAC-GTTTCACGATGGCGTTACGGATACGCAGCTGG 751 Query 27051 AAGTCGGGGAATTTCGCCCAGGCGTCGAGCTTGCGGTACGTAATGGCCGTGTCGTAGTCG 27110 || || | | |||||| ||| ||||| ||| || | |||| || ||| | Sbjct 752 AAATCCTGATAACGCGCCCACAGGTCCAGCTTCGCGTAGGTCAGCACCGTATCAAAGTTG 811 Query 27111 GTTTTCTCGCAGCGGTAGCGGTTGC----TGTCCAGCGCCGTCGGGTCGATCGGCTGGCG 27166 || | ||||| ||| || | | ||| | |||||| |||| || | || Sbjct 812 GTCTGTTCGCATTTGTA----TTCCACATCGACCATCAGCGTCGGATCGACAGGTTCACG 867 Query 27167 TTCGGCCTTCGTCGTGTCGGTGCGGCTCGCGATCGGACCGGATACCGACAGGCCGAGCTT 27226 || | || ||||| ||| | || || | | | ||| ||| || ||| Sbjct 868 CTCTTTCGCGGTGGTGTCAGTGGTTCCGGCAATGGTGCTGCCAACCCCCAGCCCCAGCAG 927 Query 27227 TTCGCCTTCCAGCTCGGTCACGGGCAGGATGTTGATGCTCTTCAGGAATGCGCTCGATTC 27286 | || | |||| ||||| ||| || ||| || | ||||||| ||| || | Sbjct 928 CTGACCGGACTGCTCAGTCACTGGCGTGACGTTAATCAGCGTCAGGAAAGCGGCGGACTG 987 Query 27287 CTGCATTTTGGTTTCGAGCGTTTGCTGGACGGACGGCTCGACGGCGAATTT 27337 ||| || | | ||| ||||| ||||| || |||||||| || | ||| || Sbjct 988 CTGGATCTGGTCTTCCAGCGTCTGCTGCACAGACGGCTCTACAGTGAACTT 1038 Score = 96.9 bits (106), Expect = 9e-16 Identities = 268/407 (66%), Gaps = 13/407 (3%) Strand=Plus/Plus Query 27850 TTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCGGCCAGGCCGACCAGATACGCTTCGCC 27909 ||| || || || || || || || || || || |||||||| ||||| || |||| ||| Sbjct 1571 TTCCGTACCCAGACTGGCAGGATCATCAGTGGCAGCCAGGCCAACCAGGTAGGCTTTGCC 1630 Query 27910 GATGTCGGCGAAGTCGGGATTGACTTCGATCGACGTGAAAACCTTCTGGCGCTTCTTCGA 27969 | || ||||| | || ||||||| || || ||||| | ||||||| || ||| Sbjct 1631 CGTATCAGCGAACTTCGGGCTGACTTCCATAGAGGTGAATAATTTCTGGCCTTTTTTCAC 1690 Query 27970 CAGCGCGACCAGCTCGTCGGTCGGATCGAGCTGCGCGTACAGCCCCATCTTGCCTTTCAG 28029 ||| | |||| || || || || | | || |||||| ||||||||||| ||| Sbjct 1691 CAGTTCCACCAAGGACTCCGTTGGCTCAACGTCGGCATACAGCGCCATCTTGCCTGCCAG 1750 Query 28030 CGGGCCGTCTTCGATCTCGGATGCCTTCAGCGCGATCACATCGCCATACGCGCCGAACGG 28089 ||| || || ||| || || |||||| |||| | ||| || ||| || || Sbjct 1751 CGGACCTTCCGTGATTTCTTCAGCAAACAGCGCCGTCACTTTGCCGTA-GCGGTTAAAGG 1809 Query 28090 GTTGGTTGCCGAGAGCGGCGCCCATCCCTTCAGGTGCTCGATATTGAGACGAGCGCCGTA 28149 ||| | |||| | ||| | |||||| | || | ||||| ||| Sbjct 1810 ------TGC--TGTCCGGCAGATAAGACTTGATGTGCTCAAGGTT--AATCAGCGCGGTA 1859 Query 28150 CAGTTCGC--GGTTGTAGTTCTTCGCCATCTGCGTGAGCCATTCGCGCTTGATCTCGCGA 28207 | ||| |||||||| | |||||||| |||||||| |||| ||| ||||| Sbjct 1860 TACACCGCCGGGTTGTAGCTGGCTGCCATCTGTTCCAGCCATTCACGCTGGATTTCGCGT 1919 Query 28208 CCGTCGACGGTCGCACCTTCGACTGCGACGCGGAAAAACTTCGTTTT 28254 |||||| || |||||||| || ||| ||| ||| ||| | ||| Sbjct 1920 CCGTCGGTAGTGGCACCTTCCACCCCGATGCGAAAACGCTTTGCTTT 1966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129653496227798