Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq220 277 4e-70 >seq220 Length=3625 Score = 277 bits (306), Expect = 4e-70 Identities = 501/726 (69%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 25218 CGCACGCGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCGAG 25277 |||| |||||| | || ||||| || |||||||||||||| || || || || || || Sbjct 2592 CGCATCCGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAA 2651 Query 25278 GCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGGCG 25337 || || || ||| ||| || | ||| || |||||||| || || ||||| ||||| Sbjct 2652 GCCCTGATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCA 2711 Query 25338 CAGGCGCACGTTTTCAAGTCGTACAT--TCGGCAGTTTGCCGCCGAGGCCGCCGAGGTCG 25395 ||||| |||||||| ||| |||||| ||| | || |||| | | | |||||| | Sbjct 2712 CAGGCTCACGTTTTTAAGCAGTACATCATCG--ACTT---CGCCAAAGAAGTCGAGGTGG 2766 Query 25396 AATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTGATTTTCCTCGGCACGA 25455 | ||| ||||| ||||| | | || ||| || | | ||||||||||| | Sbjct 2767 AGCTGAAAGGCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTACTTCCTCGGCACCA 2826 Query 25456 ATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTATTTTTGGGTGA 25515 || | || || || |||||||| ||||||| | ||| | || |||||||| ||| | | Sbjct 2827 ATGCCCGCACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGAT-A 2885 Query 25516 GCGGGTTTCGCCAG---CTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAATGGC 25572 || || |||| || ||| || || || || ||||| || ||||| ||||||| Sbjct 2886 CCGAAATT--CCAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGC 2943 Query 25573 GAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGAGTG 25632 || | || |||||||| ||||| || ||| | || ||| ||||| | |||||| | Sbjct 2944 GACAAACCTATTTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCG 3003 Query 25633 GCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATATTTCGCACT 25692 | | || | |||| | || ||| || |||||| | | | |||| | || ||| Sbjct 3004 GTGCGCTGTTCAACCGTGGGCGCAACAAAGCCGATAAGGTGGACATCGACCTGTCCCACA 3063 Query 25693 CGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACGGTCG 25752 || || | ||||| ||| |||| || | || | |||||||| || || || | Sbjct 3064 GCAATCTGGCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGG 3123 Query 25753 AGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAATACA 25812 | ||||| || |||||| || || | ||||| | ||| || ||||| | || |||| Sbjct 3124 AAGATGCAGTGCGCGGCGGATGTAACCTTTTCGACCTTGACCAGTTGCGCATGGAGTACA 3183 Query 25813 GCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGATCT 25872 || || |||||| ||| ||| ||||||| ||||| | |||||| |||||| | | Sbjct 3184 GCCCGGCCGAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGCGTCCGTAT 3243 Query 25873 TTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACGATT 25932 | |||||| ||||||||| |||||||| ||| ||||||| ||| ||||| || Sbjct 3244 TCCCGCTCAGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGAC--TT 3301 Query 25933 TCAAGC 25938 ||| || Sbjct 3302 TCATGC 3307 Score = 161 bits (178), Expect = 2e-35 Identities = 450/687 (66%), Gaps = 24/687 (3%) Strand=Plus/Plus Query 22502 GATGTTCTCGGCAACAGCAGCGCGGCCGAGGTCTTCGACGACATACGCATCGTTCGACGA 22561 |||||| || | | || |||| || | ||| || || ||||| || ||||| || Sbjct 112 GATGTTTTCCACCAGTGCTGCGCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAACGGA 171 Query 22562 TTCATAGTTCTCGATACGGTCGCGCTTCGCGTTGTCGACGATCGTGCGACGCCGTGCGCT 22621 |||| |||| || || ||||| || |||| |||||||| | || || || || | | Sbjct 172 TTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAACCGAACGGCGGCGGGTGTC 231 Query 22622 GTCTTGAAAGTACAGAGACAGATTGTCGAAACTCGTCACCATCACGGCATTGGCCGGGAA 22681 || || |||| | ||||| || || | || || | || || ||||| | |||||| Sbjct 232 CTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCGGGAA 291 Query 22682 GAAAGGCACGGTCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTCTGGATCACGTCAGC 22741 ||| ||| | ||||||| ||||| || ||||| ||||| || ||||| || || Sbjct 292 GAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATATCGGC 351 Query 22742 GGCCATCATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTGCAA 22801 |||| |||| | | ||| | |||||||| ||||||||||||||||| || Sbjct 352 AGCCAGTTTTTCACTGTTTTCCTGGTCTTTGTTGACCAGCGGGAAATACTTGTCAGACAG 411 Query 22802 CAGGCCGCGACCGCACATCACGACGAGAGCCGTGTCGTCTTGGT--GCCACGGGTCGATC 22859 ||| | ||||| || ||||| || ||| | ||||| |||| |||| |||||| Sbjct 412 CAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCAC--GTCGAT- 468 Query 22860 ATGCTC-GCGACCAGATCGGCGACGAGCGCATCGAGGTTCGCGTAATCGCCGGCCGCGCC 22918 | |||| ||| ||| || | || || ||||| || || || || | || Sbjct 469 AAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGCATATTCTCCACCTTTCCC 528 Query 22919 GAC---GAC------------GATCTTGCCGGCCGTCTTCGCGCCTTCGTCCATCACGCG 22963 ||| || | | | ||| |||| | | || | |||| ||| | Sbjct 529 GACTTTCACCGCACCCGGTGTGGTTTCACCGCCCGTGGTGGTGC---TGCCCATGACGTG 585 Query 22964 TTGCGGGGCTTGGTCGCGCATGCGTTGCAACCAGCCCTTATTGACGTCCTGCAACAGCGG 23023 | ||| || | || || || |||| |||||| || || || ||||||| |||||| Sbjct 586 ATCCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGCAGCAGCGG 645 Query 23024 GTTAGCTGCACGGTCGGACGTTGCCGCACGCGAACGGCCGTTGAAACCGATCGCGATGCG 23083 ||| | ||||| || ||| ||||||| |||||| || |||||| |||||| Sbjct 646 GTTTTCGCTACGGTTAGAGGTTTTCGCACGCTTCACGCCGTTAAAGCCGATCATGATGCG 705 Query 23084 GTCGAGCGCTTGACGGCGCACGATCACGTCGCGAATGCGGGTCTGGAAGTCGGGAAACTT 23143 ||| ||||| ||||| |||||| ||| || || || |||||| || || | Sbjct 706 GTCCAGCGCCTGACGTTTCACGATGGCGTTACGGATACGCAGCTGGAAATCCTGATAACG 765 Query 23144 CGCCCACGCGTCGAGCAGCGCATACGT 23170 ||||||| ||| ||| ||| || || Sbjct 766 CGCCCACAGGTCCAGCTTCGCGTAGGT 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103292079984626