Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=2731838 Score = 187 bits (206), Expect = 3e-42 Identities = 472/715 (66%), Gaps = 12/715 (2%) Strand=Plus/Plus Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477 |||||| || ||| | || || |||| |||| | || || || |||||||| || Sbjct 1814168 TAAAGACTTGTCACTTGTTCATTCTATGATTCCCTTAGGATCGTGTACTATGAAATTGAA 1814227 Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 154537 ||| |||||||| | | || | | ||| | || | || | |||||| | Sbjct 1814228 TGCCGCAGCAGAGATGTTACCACTAACGTGGCCATCATTATCAAATATACATCCATTTGT 1814287 Query 154538 ACCTATGATACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATG 154597 ||| || || | | |||||||| |||||| | ||| | | |||||| | || Sbjct 1814288 ACCGATTGAGCAAGCTAAAGGTTATCAAAAAATTTTCATTGATCTTGAAAAATGGCTTTG 1814347 Query 154598 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 154657 ||| | || || | ||| | | || | ||||| || ||| | | ||||| || Sbjct 1814348 TGAAGTTACTGGTTATGACAATTTTTCTCTCCAACCAAATAGTGGAGCTAATGGTGAATA 1814407 Query 154658 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 154717 || || | ||||| ||| | |||| | || ||| | || || ||||| | Sbjct 1814408 CGCTGGTTTATTAGCCATCAAGAGTTACCTTAAATCTATTGGACAAGAGAATAGAAAAAT 1814467 Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777 ||| | || ||| ||||| |||||||| |||||||| ||| ||||| | Sbjct 1814468 TTGTCTTATTCCAACATCAGCTCATGGAACAAATCCTGCCTCTGCATCAATGGCTAACTT 1814527 Query 154778 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAA 154837 ||||| || ||| | | |||| | | |||||||| | ||||||||| Sbjct 1814528 TAAAGTCGTTCCTGTTGATTCTGATAAACACGGTAACATTAATTACAAAGATCTTTCTTT 1814587 Query 154838 GAAAGCAATCATGAATACATTTG--AACTGTCATG----TATTATGATTACATACCCATC 154891 ||| || ||| | || || | | || || ||| ||| | || || ||||| Sbjct 1814588 GAAGGCG-----GAAAA-ATATGGTAGCGATCTTGGTGCTATAATGGTAACTTATCCATC 1814641 Query 154892 TACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGG 154951 |||||||||||| ||||||| ||| |||| | | ||||| | ||||| || ||||| Sbjct 1814642 TACACATGGTGTTTTTGAAAGTAATATTATTGATGTTTGTAATAAAGTTCACGAAAATGG 1814701 Query 154952 TGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATG 155011 || || || |||||||||||||| ||| | ||||||||||| ||| || | |||| | Sbjct 1814702 AGGACAAGTTTATCTTGATGGAGCTAATTTTAATGCACAGGTTGGATTATGTAGACCAGG 1814761 Query 155012 TGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGG 155071 || |||||| || |||| ||| | || | ||||| ||||||||||||||||| || Sbjct 1814762 AGACTATGGTAGTGACGTATCACATTTGAATCTTCATAAGACATTCTGTATTCCACACGG 1814821 Query 155072 AGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||| ||||| || | |||||||| ||||| || ||||| | |||||| Sbjct 1814822 AGGTGGTGGTCCAGGAATGGGTCCTATTGGTGTTAAAAGCCATCTTGCTCCATTT 1814876 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 |||| | ||| | ||| || ||||| || | || || || |||||| | || ||| Sbjct 1812973 GAAATATGCTTCAAAATGCTGGTTGGACAACGCCATATACCCCGTATCAACCGGAACTAT 1813032 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 | ||||||||| | |||| |||| | |||| |||||| | ||||| || | || || Sbjct 1813033 CACAGGGAAGACTTGAAGGTTTACTAAATTTCCAAACTATGATCACTGATTTAACTGGCC 1813092 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTAT 153432 | |||||||||||| ||| || | || ||||| ||||| ||||||| ||| | Sbjct 1813093 TTGAAATAGCAAACGCTTCTTTACTGGACGAAGCTACTGCTTGTTCAGAAGCTATGGCCT 1813152 Query 153433 TAGCATATA 153441 |||||| || Sbjct 1813153 TAGCATGTA 1813161 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 |||||||||||| ||||||| || || || ||||| |||||||| || | || ||| Sbjct 1813608 GGTAATAAAGCACTTCGATTAGCTCTTCAAACAAGAGAACAGCATATTAGACGTGATAAA 1813667 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCA 154004 || || || ||||| ||||| || ||| | | || || | ||| | | |||||| Sbjct 1813668 GCTACATCAAATATCTGTACAGCACAAGCATTACCAGCAAACCTTGCTGCAATGTATGCA 1813727 Query 154005 GCATATCATGGTGCAGATGGACTACATGCTATAGCAAGAAGAATT 154049 | |||||||| | || | |||| || |||||||||| |||| Sbjct 1813728 GTTTATCATGGACCTAATCGTTTACAGGCAATAGCAAGAAAAATT 1813772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208550026080