Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 203 4e-47 >seq3 Length=2731838 Score = 203 bits (224), Expect = 4e-47 Identities = 513/775 (66%), Gaps = 14/775 (2%) Strand=Plus/Plus Query 159034 GTATTTAAAAAATATCATAGTGAGACTGACA-TGATGAGATATATCTATGAGTTAGCATC 159092 || || || | ||||||| |||| || || | | ||||||||| | | |||| | Sbjct 1814109 GTCTTCAACACATATCATTCAGAGA-TGGCAGTTACGAGATATATGAAAAAATTAGAAAA 1814167 Query 159093 AAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAA 159152 ||||| || ||| | || || |||| |||| | || |||||||||||| | || Sbjct 1814168 TAAAGACTTGTCACTTGTTCATTCTATGATTCCCTTAGGATCGTGTACTATGAAATTGAA 1814227 Query 159153 CGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 159212 || ||| |||| || | || | | ||| | || | || | |||||| | Sbjct 1814228 TGCCGCAGCAGAGATGTTACCACTAACGTGGCCATCATTATCAAATATACATCCATTTGT 1814287 Query 159213 ACCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATG 159272 ||| || || | | ||||||||||||||| | ||| | | |||||| | || Sbjct 1814288 ACCGATTGAGCAAGCTAAAGGTTATCAAAAAATTTTCATTGATCTTGAAAAATGGCTTTG 1814347 Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 ||| | || || | ||| | | || | ||||| || ||| | | ||||| || Sbjct 1814348 TGAAGTTACTGGTTATGACAATTTTTCTCTCCAACCAAATAGTGGAGCTAATGGTGAATA 1814407 Query 159333 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 159392 || || | ||||| ||| | |||| | || ||| | || || ||||| | Sbjct 1814408 CGCTGGTTTATTAGCCATCAAGAGTTACCTTAAATCTATTGGACAAGAGAATAGAAAAAT 1814467 Query 159393 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGAT 159452 ||| | || ||| ||||| |||||||| |||||||| || ||| ||||| | Sbjct 1814468 TTGTCTTATTCCAACATCAGCTCATGGAACAAATCCTGCCTCTGCATCAATGGCTAACTT 1814527 Query 159453 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAA 159512 ||||| || ||| | | |||| | | || ||||| | ||||||||| Sbjct 1814528 TAAAGTCGTTCCTGTTGATTCTGATAAACACGGTAACATTAATTACAAAGATCTTTCTTT 1814587 Query 159513 GAAAGCAATCATGAATACATTTG--AACTGTCATG----TATTATGATTACATATCCATC 159566 ||| || ||| | || || | | || || ||| ||| | || |||||||| Sbjct 1814588 GAAGGCG-----GAAAA-ATATGGTAGCGATCTTGGTGCTATAATGGTAACTTATCCATC 1814641 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGG 159626 |||||||||||| ||||||| || || | | | ||||| | ||||| || ||||| Sbjct 1814642 TACACATGGTGTTTTTGAAAGTAATATTATTGATGTTTGTAATAAAGTTCACGAAAATGG 1814701 Query 159627 TGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATG 159686 || || || ||||||||||| || ||| | ||||||||||| || || | |||| | Sbjct 1814702 AGGACAAGTTTATCTTGATGGAGCTAATTTTAATGCACAGGTTGGATTATGTAGACCAGG 1814761 Query 159687 TGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGG 159746 ||||||||| || |||| ||| | || | ||||||||||||||||||||||| || Sbjct 1814762 AGACTATGGTAGTGACGTATCACATTTGAATCTTCATAAGACATTCTGTATTCCACACGG 1814821 Query 159747 AGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||| ||||| || | |||||||||||||| || ||||| | |||||| Sbjct 1814822 AGGTGGTGGTCCAGGAATGGGTCCTATTGGTGTTAAAAGCCATCTTGCTCCATTT 1814876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 |||||||||||| ||||||| || || || ||||| |||||||| ||| | || ||| Sbjct 1813608 GGTAATAAAGCACTTCGATTAGCTCTTCAAACAAGAGAACAGCATATTAGACGTGATAAA 1813667 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || || || ||||| |||||||||||| | | || || | ||| | |||||| Sbjct 1813668 GCTACATCAAATATCTGTACAGCACAAGCATTACCAGCAAACCTTGCTGCAATGTATGCA 1813727 Query 158680 GCATATCATGGTGCAGATGGACTACATGCTATAGCAAGAAGAATT 158724 | |||||||| | || | |||| || |||||||||| |||| Sbjct 1813728 GTTTATCATGGACCTAATCGTTTACAGGCAATAGCAAGAAAAATT 1813772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| | ||| | ||| || ||||| || | || || || |||||| | || ||| Sbjct 1812973 GAAATATGCTTCAAAATGCTGGTTGGACAACGCCATATACCCCGTATCAACCGGAACTAT 1813032 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 | ||||||||| | |||| |||| | |||| |||||| | ||||| || | || || | Sbjct 1813033 CACAGGGAAGACTTGAAGGTTTACTAAATTTCCAAACTATGATCACTGATTTAACTGGCC 1813092 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGT 158107 | ||||||||||| ||| || | || ||||| ||||| ||||||| ||| | Sbjct 1813093 TTGAAATAGCAAACGCTTCTTTACTGGACGAAGCTACTGCTTGTTCAGAAGCTATGGCCT 1813152 Query 158108 TAGCATATA 158116 |||||| || Sbjct 1813153 TAGCATGTA 1813161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046885174320