Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-40 seq1 102 2e-16 >seq4 Length=2360143 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| ||||||||||| ||||||| ||||||||| ||||| || Sbjct 1036134 AACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTC 1036075 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| || || ||||| |||||||| Sbjct 1036074 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTG 1036015 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| || || ||||| || | || || Sbjct 1036014 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035955 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || ||||| | ||||| Sbjct 1035954 GCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| ||||||||||| ||||||| ||||||||| ||||| || Sbjct 1036362 AACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTC 1036303 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| ||||| || ||||||||||| Sbjct 1036302 AAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTG 1036243 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| || || ||||| || | || || Sbjct 1036242 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036183 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || || || | ||||| Sbjct 1036182 GCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| ||||||||||| ||||| | ||||||||| ||||| || Sbjct 1035678 AACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTC 1035619 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| || || || || |||||||| Sbjct 1035618 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035559 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| || || ||||| || | || || Sbjct 1035558 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035499 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || || || | |||||| Sbjct 1035498 GCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||||||||| || |||||||||| ||||||||| ||||| || Sbjct 1035906 AACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTC 1035847 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| || || || || |||||||| Sbjct 1035846 AAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035787 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| || || ||||| || | || || Sbjct 1035786 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035727 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || || || | ||||| Sbjct 1035726 GCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||||||||| || |||||||| | ||||||||| ||||| || Sbjct 1036590 AACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTC 1036531 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| || || ||||| || ||||| Sbjct 1036530 AAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTG 1036471 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| |||||| || ||||| || || ||| || || ||||| || | || || Sbjct 1036470 AATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036411 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || ||||| | ||||| Sbjct 1036410 GCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||||||||| || |||||||| | ||||||||| ||||| || Sbjct 1036818 AACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTC 1036759 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || |||||||| | || |||||||||||| || || || || |||||||| Sbjct 1036758 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1036699 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| || || ||||| || | || || Sbjct 1036698 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036639 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || || || | ||||| Sbjct 1036638 GCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 >seq1 Length=5851329 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| |||||||||||||| || || |||||||||||||| ||||| Sbjct 5400447 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAG 5400388 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || ||||| || || || |||||||| || | ||||| || || | Sbjct 5400387 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 5400328 Query 195119 AAGTTTTTACGAACACTTGCATTT 195142 ||| || ||||| | |||||||| Sbjct 5400327 GAGTCTTAACGAAAATTTGCATTT 5400304 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| |||||||||||||| ||||| |||||||| || || || || Sbjct 5040691 TACCGGCAAAAATAAGCCGTTGTTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAG 5040632 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || |||| || || || || || ||||| || | || ||||| || | Sbjct 5040631 TCTTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 5040572 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||||||||| | |||||| Sbjct 5040571 AAGTTTTTACGAAAATTTGCAT 5040550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473255658229