Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1 113 6e-20 seq16 86.0 8e-12 >seq1 Length=5851329 Score = 113 bits (124), Expect = 6e-20 Identities = 322/487 (66%), Gaps = 20/487 (4%) Strand=Plus/Plus Query 104989 AGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATAT-A 105047 |||||||||||||||||| |||| || || |||||||||||| ||| ||| ||||| | Sbjct 5221564 AGAAGGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGA 5221623 Query 105048 TCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATAGAAA 105107 || | |||| |||||||||| || |||| || || ||| || | ||||| || Sbjct 5221624 GGGAGT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATTGATC 5221682 Query 105108 CTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTTGGAATGTGTCACAAT 105167 |||||||| ||||| | ||||||| || || | ||||||| || | Sbjct 5221683 AAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATC----T 5221738 Query 105168 TATC-AGAT---ATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAAT 105223 ||| ||| |||| | | || || |||||| | || |||||||| || | || Sbjct 5221739 GATCTTGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGTTCAAGAT 5221798 Query 105224 AAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCA 105283 | | ||| |||||| ||||||||| | || ||| | || || || || ||| Sbjct 5221799 GGA---GAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCA 5221855 Query 105284 TATAATATTGGTTTCTATTCATTTTTG--GTGTGTGTTCTCTCAAAATGGTGTAATCTAA 105341 | ||| |||| || || ||| || || || | | ||| | ||| || ||| Sbjct 5221856 TTTAACATTGCTTCATACTCACTTATGACCCACATGATTGCAAAAATTTGTGGAA--TAA 5221913 Query 105342 CCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAACCATGTTGACC 105401 | | || | ||| |||| ||| |||| |||| |||| | ||| ||||||||||| Sbjct 5221914 CAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCATGTTGATG 5221973 Query 105402 AATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAAAGGTGAAATTTGT---GG 105458 || | | ||||| | || |||| ||| | ||||||| | | |||||| || Sbjct 5221974 CTTTGAGACAACAATTGACTCGAGAACCCTACCCATTCCCAACAATTAGATTTGTAGGGG 5222033 Query 105459 GTAATTT 105465 |||||| Sbjct 5222034 ATAATTT 5222040 >seq16 Length=715404 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 98736 CTGATTATAAACACGGTGAACAAAACCTTTG-TGAA-ACAATAATAAAATTTGCACAAGA 98793 ||| ||| | || ||||||||| ||||| ||| || || || || || || || || Sbjct 673109 CTGCTTACCACCATGGTGAACAAT--CTTTGATGATGACTATTATCAATTTAGCTCAGGA 673052 Query 98794 TTTTGTGGGTACAAATAATATAACACTACTTGA-GCCAGATGGTCAGTTTGGTACCAGAC 98852 || ||| || |||||||||| | ||| ||| ||| |||||| |||||||| |||| Sbjct 673051 TTATGTTGGATCAAATAATATTA-ACTTATTGTTGCCCATTGGTCAATTTGGTACTAGAC 672993 Query 98853 TTGAAGGAGGTAAAGATTCGGCTGCATCAAGGTATATTT 98891 || |||||||||||||||| ||| | | | ||||||| Sbjct 672992 TTCAAGGAGGTAAAGATTCTGCTTCGCCTCGTTATATTT 672954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658398368966520