Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq10 111 2e-19 >seq1 Length=5851329 Score = 165 bits (182), Expect = 1e-35 Identities = 525/809 (65%), Gaps = 4/809 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || || | ||| |||||||| || | |||| || || ||||| || || |||| Sbjct 4934282 CATTACACCGAATTTCTGATATTCAGATAC-CTTCTTCTCAAAGAAATTGGTTTTACCTT 4934224 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | | ||| | ||| |||||||||||||||| || |||||||| | | ||| Sbjct 4934223 CAATTGAGAGATTAACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAAT 4934164 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | ||| || || ||| ||||| |||| || || | |||||||| | ||| Sbjct 4934163 TAAGTTCTACCAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGT 4934104 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || ||||| | | || || | ||||| |||| || || || || | || | Sbjct 4934103 TCATTCCAATCATATCAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGG 4934044 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 ||||||||| ||| | ||| |||||||| ||| | | || || | ||| Sbjct 4934043 CATCTTTAATTATTTCTTTGATACGTTCTTCAGATGGTTTGTTCTCCAAGTAGCTGTACA 4933984 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 | |||||||||||||| |||| || ||||||| || || ||||| || | Sbjct 4933983 TAAGACATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTG 4933924 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || ||||| || || | || |||| ||| ||||| || ||||| || || || | Sbjct 4933923 TTAACCCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGA 4933864 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 |||| || || ||||| ||||| || || | | ||| || ||||| | | | | || Sbjct 4933863 AGAATATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTAT 4933804 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATT 37409 ||| ||||||| || | |||||| || || | | | | |||| | ||| Sbjct 4933803 CAGCAATCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAA-A 4933745 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || || || || |||| || ||| || ||||| ||||| || Sbjct 4933744 GCATTGAAAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAG 4933685 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||||||| ||||||||||| || || || || ||||| || ||| | | || ||| Sbjct 4933684 TACATTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCA 4933625 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | ||||| || || | || || | | |||| || || || || || ||||| Sbjct 4933624 GGGACCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGAT 4933565 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649 || ||||| || || | || | ||||| | | ||||||| ||| | | || | Sbjct 4933564 GCAGCAAAAAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCATCTGACATTGATTCC 4933505 Query 37650 CAATCATTAATATCTTTTGATAAATCAAC 37678 || || || ||||| ||| || ||||| Sbjct 4933504 CAGTCTTTCATATCCTTTCCCAAGTCAAC 4933476 >seq10 Length=1069219 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 153286 CAGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTG 153345 |||| ||||||||||| ||||||||||| || || | |||||| | || || || |||| Sbjct 274179 CAGGAGTTTTACATACCAAATTTTGGATTGTCGACCAAAAACATATCTACATTGGTAGTG 274120 Query 153346 CTAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATA 153405 | ||||||||||||| |||||| ||| |||| |||||| | || || ||| | || Sbjct 274119 CAAATATGGATTGGAAATCACTGACTGAAGTCAAAGAAATGGGCGTATTAATAGAAGATT 274060 Query 153406 ATTCTTGTATAGCTAATGAACTAACTAAAATATTTAACATATAT 153449 ||| ||| |||| |||| | ||||||||||| ||||| Sbjct 274059 GTTCCTGTCTAGCACATGATTTGCATAAAATATTTACAGTATAT 274016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312453875480