Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 3e-14 >seq4 Length=2360143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||||||| || |||||||| || ||| ||| | || || Sbjct 1035905 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCA 1035846 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || |||| || ||||| || | || | ||||||||||| | Sbjct 1035845 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035786 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || | ||| ||||| | || || ||||| Sbjct 1035785 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035726 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||||||||| Sbjct 1035725 CCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||||||| || ||||||||||| ||| ||| | || || Sbjct 1036817 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036758 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || || || || | || ||||| || | || | ||||||||||| | Sbjct 1036757 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1036698 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || | ||| ||||| | || || ||||| Sbjct 1036697 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036638 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||||||||| Sbjct 1036637 CCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| ||||||||||| |||||||| ||| ||| | || || Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCA 1035618 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || || || || | || ||||| || | || | ||||||||||| | Sbjct 1035617 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035558 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || | ||| ||||| | || || ||||| Sbjct 1035557 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035498 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || |||||||| || |||||||| ||||| || Sbjct 1035497 CCTGTCAAAGTCTTAACAAAAATTTGCATGGT 1035466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| ||||||||||| ||||| || ||| ||| | || || Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036302 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || || | || ||||| || | |||| ||||| ||||| | Sbjct 1036301 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 1036242 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || | ||| ||||| | || || ||||| Sbjct 1036241 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036182 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| |||||||| Sbjct 1036181 CCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934874748601