Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 >seq1 Length=5851329 Score = 114 bits (126), Expect = 3e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 133893 TTATTGATGGATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATG 133952 |||||||| | | ||||| || ||| ||| || | ||| || |||| |||||| Sbjct 5221674 TTATTGATCAAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATC 5221733 Query 133953 TTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAA 134012 ||| || ||||||||| ||| || ||||||||| || |||||| | || Sbjct 5221734 CATCTGATCTTGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGTTC 5221793 Query 134013 ATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTAC 134072 | || || ||||| ||| | | |||||||| || ||||| | || ||||| | Sbjct 5221794 AAGATGGAGAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTC 5221853 Query 134073 CATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAG 134132 |||| |||||||||||||| ||| | | || || ||| | ||| || ||||||| || Sbjct 5221854 CATTTAACATTGCTTCATACTCACTTATGACCCACATGATTGCAAAAATTTGTGGAATAA 5221913 Query 134133 AAGTTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAG 134192 | |||||| ||||| | ||| |||| ||| ||||||||||| || || || | Sbjct 5221914 CAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCATGTTGATG 5221973 Query 134193 C 134193 | Sbjct 5221974 C 5221974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147581769044326