Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 113 8e-20 >seq1 Length=5851329 Score = 113 bits (124), Expect = 8e-20 Identities = 313/477 (66%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || ||||| || ||||| || || |||||||| || ||||||||| | || |||||| Sbjct 4933545 GTATTGGCCTTTTTTGCTGCATCAGATGGTATTGTCAACGAGAATTTAGTTGAAAGATTC 4933604 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | |||||| ||| | ||||| | ||||||||||||||| || ||||| ||| Sbjct 4933605 TCAAAGGAAGTTCAGGTCCCTGAGGCACGCTTTTTCTACGGTTTCCAAATTGCCATGGAA 4933664 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 ||| | || ||| |||| | |||||| | || |||||| || | || Sbjct 4933665 AATATTCATAGTGAAATGTACTCAAAGCTTATTGAAACTTACATTCGTGATCAGGATGAA 4933724 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCA-GCATCAAGAGGAAGGCGCGGTG 25835 || || ||| || ||| | || | || |||| ||||| || ||| || || Sbjct 4933725 AGGAATAAGCTTTTCAATGCTTTGGATGA-ATTCCCATTCATCAGGAAGAAAGCTGATTG 4933783 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 ||| | | ||||| | | ||||| ||||| || || | | || || || Sbjct 4933784 GGCTCTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCGC 4933843 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAA 25955 ||||| ||||| || || ||| |||||| ||||| ||||| |||||||| ||| || Sbjct 4933844 AGCTGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGCG 4933903 Query 25956 GGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 || ||||| ||| | || || ||| | || | | || ||||| || || Sbjct 4933904 CGGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTACA 4933963 Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 | | |||||||| || || | |||| || ||||| ||||||| ||| |||| Sbjct 4933964 CCGTGATTTTGCATGTCTTATGTACA---GCTACTTGGAGAACAAACCATCTGAAGA 4934017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837984601280