Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq1 138 7e-28 >seq1 Length=5851329 Score = 138 bits (152), Expect = 7e-28 Identities = 223/316 (71%), Gaps = 5/316 (2%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 ||| || || ||||||||||| || || || ||||||| || || || | | ||| Sbjct 5221966 ATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCC 5221907 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 || | | ||||| || || || | | || ||||||||||||||||||||||| ||| Sbjct 5221906 ACAAATTTTTGCAATCATGTGGGTCATAAGTGAGTATGAAGCAATGTTAAATGGAACTCC 5221847 Query 78485 TAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATAC 78544 || || ||||| || ||||| ||||| || ||||||| || |||||| ||| || Sbjct 5221846 CAAACCGACATCACCACTGCGTTGATACAAATGACAACTTAACTCTCCATC--TTGA-AC 5221790 Query 78545 GTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATT 78604 ||||| || | || || ||||| || |||| |||| | ||| | |||| ||||| Sbjct 5221789 ATAAAATTGAACAAGTGTATGACATGGAGGTAAAACCATTTTATCAAGATCAGATGGATT 5221730 Query 78605 CCAAGCAGACACAATATGTCTGCGTCCGTAAGGG-TCTTTCATAATAGATTCTATTACAT 78663 ||||||||| | ||| ||| | | ||||| | ||| || | || || || |||| Sbjct 5221729 CCAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTTTTTATTTGA-TCAATAACAT 5221671 Query 78664 TAGCTATTTGGTCAAT 78679 |||| ||| ||||| Sbjct 5221670 CTGCTAGTTGATCAAT 5221655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300157852636600