Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq220 650 0.0 >seq220 Length=3625 Score = 650 bits (720), Expect = 0.0 Identities = 842/1154 (73%), Gaps = 28/1154 (2%) Strand=Plus/Plus Query 10776 GCGGCAACGAGGCCGATCTGAATCCGAACGTACGCAACCGTAACAAAGGCGAGCGCC--- 10832 |||||||||| ||||| | || || ||||| |||||| ||||||||| ||||| Sbjct 2422 GCGGCAACGAAGCCGACTTAAACCCTAACGTCGCCAACCGCAACAAAGGCCCGCGCCGTC 2481 Query 10833 AGCCGGTCGTGAAGAACGTCTTCAGCGACGAGCAGGCGGAAAAGCTGACCGGCCTGTTTA 10892 | |||| ||||| ||||||| ||| || ||| || |||||| | | || Sbjct 2482 AACCGGAA---AAGAATGTCTTCACCGATGAACAGATTGAGAAGCTGGAAGA---GATTT 2535 Query 10893 TGGATAACTGCTT--TGAA-TATCAGCTCAACTGGCACAAAGCCGGACTGGATCACCGTA 10949 | || || | | | || || |||| | ||||| |||||||| |||| | Sbjct 2536 TCCATTCCTCCATGTTCAACTACCAGCGCCACTGGTGGGAAGCCGGAAAAACCAACCGCA 2595 Query 10950 TCCGCAACATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGC 11009 |||||||| | |||||||| |||||||| || || || || ||||||||||| || || | Sbjct 2596 TCCGCAACCTGCTGAAGTCACGCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAAGCCC 2655 Query 11010 TGATTGACGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGG 11069 |||||||||| ||| ||||| || |||||||| || | || ||||| ||||| |||| Sbjct 2656 TGATTGACGCCCTGCTTACCGGACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCACAGG 2715 Query 11070 CGCACGTCTTTAAAAACTACATCATTGACTTTGCCCGCCAGGTGGACGTTGACCTGAAGG 11129 | ||||| ||||| | |||||||| ||||| ||| | || || || || ||||| | Sbjct 2716 CTCACGTTTTTAAGCAGTACATCATCGACTTCGCCAAAGAAGTCGAGGTGGAGCTGAAAG 2775 Query 11130 GCGACCCGATTGTGCTGCCGAACGGTGCC-CGCCTGATTTTTCTTGGCACCAACGTGCGC 11188 |||| ||||| ||||| || ||||| ||| ||| | | || || |||||||| | ||| Sbjct 2776 GCGATCCGATGGTGCTTCCTAACGGAGCCACGCTTTA-CTTCCTCGGCACCAATGCCCGC 2834 Query 11189 ACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGATACCGAAATTC 11248 ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 2835 ACCGCCCAGAGCTACACCGGCAATCTGTATCTGGATGAGTATTTCTGGATACCGAAATTC 2894 Query 11249 CAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTAC 11308 ||||| ||||| || || || ||| ||| | | || ||||| ||||| ||||| Sbjct 2895 CAGGAACTGCGCAAAGTGGCTTCCGGTATGGCTATTCACAAAAAATGGCGACAAACCTAT 2954 Query 11309 TTTTCCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTC 11368 ||||||||||| || |||||| | ||| ||||||||||||||||| || | ||||||| Sbjct 2955 TTTTCCACGCCATCCAGCCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTGCGCTGTTC 3014 Query 11369 AACAAAGGGCGGCGCAGCAAAGCCGATCGCATCGAAATCGACCTGTCGCATACGCACCTG 11428 ||| | |||||| |||||||||| | || ||||||||||| || | | ||| Sbjct 3015 AAC---CGTGGGCGCAACAAAGCCGATAAGGTGGACATCGACCTGTCCCACAGCAATCTG 3071 Query 11429 GCAAAAGGCGCGCTGTGCGGTGACGGCCAGTGGCGGCAGATTGTGACGGTTGAGGATGCG 11488 || ||| |||||||| ||||| || | || ||||| || || || || ||||| Sbjct 3072 GCCCCCGGCCTGCTGTGCGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGATGCA 3131 Query 11489 CTGACCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATACAGCCCGTCG 11548 || |||||| |||||||| || ||||| |||||| | | |||| ||||||||| | Sbjct 3132 GTGCGCGGCGGATGTAACCTTTTCGACCTTGACCAGTTGCGCATGGAGTACAGCCCGGCC 3191 Query 11549 GAATACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGCGTGTTCCCGTTC 11608 ||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| || Sbjct 3192 GAATACCAGAACCTGCTGATGTGCGAGTTTGTGGACGATCTCGCGTCCGTATTCCCGCTC 3251 Query 11609 GCCGAGCTGCAGACCTGCATGATCGACAGCCTGGAGGAATGGAGCGACTTT-AACCCGTA 11667 |||||||||| | |||||| | |||||| ||| | |||| ||||||| | | | Sbjct 3252 AGCGAGCTGCAGGCGTGCATGGTGGACAGCTGGGAAGTCTGGACCGACTTTCATGCACTG 3311 Query 11668 CCTGCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCG---------TC 11718 || | ||||||||||| | ||| || ||||| || || |||||| | Sbjct 3312 GCT-CTGCGCCCGTTTGGCTGGCGCGAAGTGTGGATCGGTTATGACCCGGCGAAAGGTAC 3370 Query 11719 GCACACCGGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAA 11778 ||| | |||||||||||| || || | || | || ||||| || ||||||| || Sbjct 3371 GCAAAACGGCGACAGCGCCGGATGCGTGGTGGTGGCACCGCCAGCCGTGCCGGGCGGTAA 3430 Query 11779 GTTTCGCGTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGGCAAAATC 11838 ||| ||| | || ||||||||||||||||| || |||||||| ||| ||||| | | Sbjct 3431 GTTCCGCATTCTTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGCGCCCAGGCTGACGC 3490 Query 11839 CATTGAGGACTTAACGAAAAAATACACCGTCGAGTATATCGGCGTGGATGCGACCGGCAT 11898 ||| | | | || || | |||| ||| ||||||||| | || |||||||| | Sbjct 3491 CATCAAAAAACTGACCGAACAGTACAACGTGACCTATATCGGCATCGACTCGACCGGCGT 3550 Query 11899 CGGCCAGGGCGTTT 11912 || || || |||| Sbjct 3551 TGGTCACGGGGTTT 3564 Score = 318 bits (352), Expect = 1e-82 Identities = 486/684 (71%), Gaps = 30/684 (4%) Strand=Plus/Plus Query 8412 ATGTTTTCCACCAG-GCAGCCTGCCGCG-TAGTCTTCCACCACGTAGTCCTCGTTGATGG 8469 |||||||||||||| || || || ||| ||||| || ||||| ||| | ||||| | || Sbjct 113 ATGTTTTCCACCAGTGCTGC--GCAGCGGTAGTCCTCAACCACATAGGCTTCGTTAACGG 170 Query 8470 ACTCGTAGTTTTCGATGCGGTCGCGCTTCGGCACCTCGTCGATCAGG---CGGCGGTGCG 8526 | || ||||||| || ||||| || ||||| | |||||| | |||||| | | Sbjct 171 ATTCAAAGTTTTCAATCCGGTCACGTTTCGGG---TTGTCGATAACCGAACGGCGGCGGG 227 Query 8527 TGCCTTCCTGCCAGTAAATTGACAGGTTATCGAGGCGCGTAATCATCAGGGCATTGGCCG 8586 || | |||||||||||||| ||||||||||| || || || |||| ||| ||||| | || Sbjct 228 TGTCCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCAGCAGCGCATTCGGCG 287 Query 8587 GGAAATACGGCACGCGCACGGCAGGCAGGTTGCCGATGCGTTTCTGACTGACAATCAGGT 8646 |||| ||||| | |||||||| ||||| || |||||||||||||||| |||| | Sbjct 288 GGAAGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCTGACTGATGATCATAT 347 Query 8647 CGGCGGCCAGCTGCTCGGTGTTGGCCTGGCTCTGGTTCACGATGGGGAAATACTTGTCGG 8706 |||| ||||| | || |||| ||||| | ||| || | |||||||||||||| | Sbjct 348 CGGCAGCCAGTTTTTCACTGTTTTCCTGGTCTTTGTTGACCAGCGGGAAATACTTGTCAG 407 Query 8707 CCAGCAGCTGACGGCCGCAGATCACAACCAGCTCCGGGTCTTCCTG--ATACCACGGCTC 8764 |||||||| ||| || || ||||| ||||| || || ||||| | |||||| || Sbjct 408 ACAGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCTGGTAGACCACG--TC 465 Query 8765 AATCAGGGTGTTGGTGGCGTCCATCACCAGTGCGTCAAGGTTCACATAGGTGCGCCCTTT 8824 || || ||| ||| |||||||||| ||||| ||||| |||| | ||||| Sbjct 466 GATAAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGCATATTCTCCACCTTT 525 Query 8825 GCCGAC-----CAGCACCTTGT---CTTCCACCGTGCCGTTCTCAAGGGTGACGTTGCTC 8876 ||||| | ||||| || || ||||| |||| |||| | ||| | Sbjct 526 CCCGACTTTCACCGCACCCGGTGTGGTTTCACCG-CCCGT-------GGTGGTGCTGCCC 577 Query 8877 ATCACGCGCTTGGGTGCGTTGTCGCGATACTTCTGCAACCAGCCCACGGCCACGTCCTGC 8936 || ||| | | ||||| | || || ||||||| |||||| | ||| |||||| Sbjct 578 ATGACGTGATCCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTTGTTCACATCCTGC 637 Query 8937 AACATGGGGTTAACGGCGCGATTGGAGGTTTTGGCGCGGTGGGTACCGTTAAAGCCGATC 8996 | || ||||| || || || |||||||| || || | ||||||||||||||| Sbjct 638 AGCAGCGGGTTTTCGCTACGGTTAGAGGTTTTCGCACGCTTCACGCCGTTAAAGCCGATC 697 Query 8997 ATGATGCGGTCGAGTGACTGGCGCTTTACGATGGCATCACGCAGGCGGGCCTGAAAATCT 9056 ||||||||||| || | ||| || || |||||||| | ||| | || ||| ||||| Sbjct 698 ATGATGCGGTCCAGCGCCTGACGTTTCACGATGGCGTTACGGATACGCAGCTGGAAATCC 757 Query 9057 TCATAGCGGGCCCACAAATCCAGC 9080 | ||| || ||||||| |||||| Sbjct 758 TGATAACGCGCCCACAGGTCCAGC 781 Score = 219 bits (242), Expect = 8e-53 Identities = 345/494 (70%), Gaps = 0/494 (0%) Strand=Plus/Plus Query 9824 TCAATCAGCGTTTCTTCCGCAGCCGTAAACAGGTTGTCTTTATGCAGCTTGCGTGAGGCC 9883 || |||| |||||| || ||||| ||||| || ||| | || | ||||||| ||| Sbjct 1473 TCGATCACCGTTTCCTCTGCAGCGGTAAAAAGATTGGCGGGATTCTGCTTGCGGTTTGCC 1532 Query 9884 AGCGGATTCGCCGCAGCGGTGGCGCTGAAGCTCAGAATCTCAGTGCCGAGGCTTGCCGGG 9943 ||||| || || || |||||||||| |||| || || || || || || || || Sbjct 1533 AGCGGGTTATGGGCTGCACTGGCGCTGAATGTCAGCATTTCCGTACCCAGACTGGCAGGA 1592 Query 9944 TCGTCGGTCACGGCCAGACCAACCAGATAGGCTTCGCCGGTGTCGGCAAACGCCGGATTC 10003 || || || | ||||| |||||||| ||||||| ||| || || || ||| ||| | Sbjct 1593 TCATCAGTGGCAGCCAGGCCAACCAGGTAGGCTTTGCCCGTATCAGCGAACTTCGGGCTG 1652 Query 10004 ACCTCAATGGAGGTGTAAATTTTCTGGCGTGCCTTTGTCAGCGCAACCAGCTCCGGCGTC 10063 || || || |||||| | | |||||||| | || ||| | |||| | ||| Sbjct 1653 ACTTCCATAGAGGTGAATAATTTCTGGCCTTTTTTCACCAGTTCCACCAAGGACTCCGTT 1712 Query 10064 GGGTCAATCCAGCCATACAGCGCCAGCTTGCCTTTCAGCGGGCCGTCGGTGATTTCTGCC 10123 || |||| | |||||||||||| ||||||| |||||| || || ||||||||| | Sbjct 1713 GGCTCAACGTCGGCATACAGCGCCATCTTGCCTGCCAGCGGACCTTCCGTGATTTCTTCA 1772 Query 10124 GCTTCCACGGCGGTGACGTCACCAAAGCGGCGGAAGGTGCCGTCAGGCCCGTAGCTCTTG 10183 || || || || || | || ||||| ||||||| ||| ||| || |||| Sbjct 1773 GCAAACAGCGCCGTCACTTTGCCGTAGCGGTTAAAGGTGCTGTCCGGCAGATAAGACTTG 1832 Query 10184 ATGTGTTCCATATTGATGCGTGCGCCGTAGACGGACGGGTCATAGCTCGCCGCCATCTGC 10243 ||||| || | || || | ||| || || | ||||| ||||| || |||||||| Sbjct 1833 ATGTGCTCAAGGTTAATCAGCGCGGTATACACCGCCGGGTTGTAGCTGGCTGCCATCTGT 1892 Query 10244 GAAATCCAGTCACGGGAAATTTTGCGCCCGTCGGTGGTTGCGCCTTCGACGGCGATGCGA 10303 | ||| ||||| |||| ||| |||||||| || || ||||| || |||||||| Sbjct 1893 TCCAGCCATTCACGCTGGATTTCGCGTCCGTCGGTAGTGGCACCTTCCACCCCGATGCGA 1952 Query 10304 AAACGCTTTGCTTT 10317 |||||||||||||| Sbjct 1953 AAACGCTTTGCTTT 1966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94482541393044