Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq233 161 5e-35 seq1 138 6e-28 >seq233 Length=3140 Score = 161 bits (178), Expect = 5e-35 Identities = 317/466 (68%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | ||| ||| | || || || |||||| | ||| |||||||| |||| | Sbjct 2052 GGACACATTAACGACCAGTAAGAATCTTTCTCAACACGTTTCATGAATAAATCAGGAACC 2111 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAG 26010 || | |||| || ||||||| ||||| |||||| || ||| ||||| || || Sbjct 2112 CAAAGCCCATAGAACAAATCTCGTGCTCTTTCCTCTTCTGGACCTGTG-TTCTTCTTAAG 2170 Query 26011 ATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070 || | || || | ||||| | ||||||||||||||||| || ||||| || Sbjct 2171 GTCCAGAAATTCCATGATATCAGCATGCCATGGTTCTAAATATATTGCAAATGCTCCGGG 2230 Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130 ||||| |||||||| || || || | ||| || | ||| |||||| |||||||||| Sbjct 2231 CCTTTTATTACCACCTTGGTCAACATAACGTGCCGTATTATTAAAAACTCTCAACATTGG 2290 Query 26131 AACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATC 26190 || ||||||| | || || ||||| | | ||| || || | | |||||| Sbjct 2291 AATTAATCCATTGGATGTCCCATTTGTCCCACCAATAAATGAACCATTAGCCCTAATACA 2350 Query 26191 GTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGT 26250 ||| ||| | |||||| ||||| || |||| || || || || | | | ||| Sbjct 2351 ATGAACATTTAAACCGATACCACCTGCAGATTTCGAGATCAAAGCGCATTGTTTCAGTGT 2410 Query 26251 ATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310 ||| ||||||||| ||| |||||| |||| || || ||||| ||||| | ||| Sbjct 2411 GTCGTAAATTCCTTCTATAGAATCACCGGCCATTGTTAGCAAGAAACATGAAGACAGTTG 2470 Query 26311 CGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 | | | ||||| | ||||||||| || || | ||| |||||| Sbjct 2471 GGGTCGCCTAGTTCCCGCATTAAATAAAGTTGGGGAAGCGTGAGTA 2516 >seq1 Length=5851329 Score = 138 bits (152), Expect = 6e-28 Identities = 1067/1683 (63%), Gaps = 66/1683 (4%) Strand=Plus/Minus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||| ||||||||||| | ||| ||||| || |||||||| || |||||||| |||| Sbjct 2655573 CTGCCGGTTTAGTTCTTAAATAGTACATCCCTGTTTTCAAACCATTTTTCCAACCATAAA 2655514 Query 24744 AATGCATTGATGTTAGTTTTGCA-ATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGA 24802 ||||||| || | | || || | ||| | | ||| || | | || | |||||| Sbjct 2655513 AATGCATCGAACTACATATTCCATAAGTTGGTTTATT-TACATGAAGATTAAGTGATTGA 2655455 Query 24803 GCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCG-TTTTCATCGATAT 24861 | ||| |||||| | | ||| || | ||||| || | |||| | || || Sbjct 2655454 GATTGATCTACAAAAGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGA-AT 2655396 Query 24862 ATCGTAAGCTGTTTTGT--ATCTCTCTTTTATCTCAGTTGGAATACTTGCA-ATATTTTG 24918 || || | ||||| | | ||||| ||| | | |||||| | ||| |||||||| Sbjct 2655395 TTCCCAAACAGTTTTATGGAGTTCTCTAATATGTAA--TGGAATG-TCGCATATATTTTG 2655339 Query 24919 AACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTGT-CCAAAGATTAATTT 24977 || || ||||| | | ||||| || | | | ||| || ||||| | || Sbjct 2655338 AATAGACCCATTATTT-TCAATTATTTGATTAAGAATTTCCTCGTTCCAAATACCAAGGC 2655280 Query 24978 TTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC 25037 | | ||||| | | || |||||| || ||| || ||||| ||||| | || Sbjct 2655279 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 2655220 Query 25038 TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAG 25097 || | |||| ||||| || |||| |||| | |||||||| | || | || ||||| | Sbjct 2655219 TTGTATATAAATTTGATGTATATGGCTCAATAGATTCATTACTCCCAAGAATCTGAGATG 2655160 Query 25098 TAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCT 25157 |||| || || |||||||||| | ||| | ||||| | | |||| ||||| ||| | Sbjct 2655159 TAGAAGCAGTGGGCATTAATGAAACTAACAATGAATTACGAATACCAAATTTAGAAATTT 2655100 Query 25158 CTTGTTTTAATTTATCCCAATC---TAAATTATTATCTAACTCGATATCGTTATCATATA 25214 || || || || | ||||| |||||| | | | | || | | || ||| Sbjct 2655099 TCTGCTTCAAATTTTTCCAATTCCATAAATTGCT--CGGAGT-GACACCC----CACATA 2655047 Query 25215 AATCAAATTGTAACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCT 25273 ||| |||| || ||||| ||| | | |||| ||| |||||| ||| ||| || Sbjct 2655046 --TCATATTG-AAGAATCCCCTTAGATACAGGTGATCCATCAAACGTTTCATAGGGTCCA 2654990 Query 25274 TTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATC 25333 | | | || | || | || ||| | ||| ||| ||| ||| ||||||| || Sbjct 2654989 TGAATCTTAGCTAATTCATAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATT 2654930 Query 25334 GCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTC-CATTAAGGCGAACGT 25392 | | || | | | |||||| | | || ||| || || ||| | || || Sbjct 2654929 TTTCTATTAAGATCCCTAGCTTCTGGTG-ATGCAAATGGATATCTCATGAGTAAAAATGT 2654871 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 |||||| | ||| || ||||| | ||||| || |||||||| |||| || | Sbjct 2654870 ATCTGCAAGTCCTTGTACTCCAATTCCAATAGGTCGATGTTTGGTATTTGATAAACGTGC 2654811 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| ||| || | || |||| || || |||| | ||||||| | || ||| Sbjct 2654810 TTCTTCAAGTGGGTAATAGTTAATATCAATAACCTTATTCAAATTCTTTGTCAAAATCTT 2654751 Query 25513 TGTGTATTTTCTCAACTCAAT-AAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTA 25571 ||| || || | || | ||| |||||| ||| || | | | || | | | Sbjct 2654750 TGTA-ATGTTGTGAAGGAGTTTAAAATCAAAAACAGGTTTTTTCTCTTTAA---TCATGA 2654695 Query 25572 CAAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGAAT 25631 |||| ||| | || || || |||||||||| ||||| ||| || |||| Sbjct 2654694 CAAAATTATTAAGTGCAATAGACCCTAAATTACATACAGCAACTTCATTAGGAGAAGAAA 2654635 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTA- 25690 ||| | || || ||| | || | | || ||| ||| |||| | ||||||| Sbjct 2654634 ATTGAACAATTTCAGCACAAAGATTTGAACACTTTATTGTTCCTAAATTTTGTTGATTAC 2654575 Query 25691 TTGCATGTATTGACAATA-TCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGA 25749 || | | ||| ||||| || || || | |||||| | || ||||| || ||||| Sbjct 2654574 TTTTACG-ATT-ACAATGGTCCTTGTAAAGCATATATGGAATACCCGTTTCTATCTGAGA 2654517 Query 25750 TACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACTTTCTT--TACGAAGTTACCATCA 25807 | | | || |||| ||||| | ||| |||||||||| || || | | | ||| Sbjct 2654516 TTCACAGATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGCTTT--TCA 2654459 Query 25808 GAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTG 25867 || | | | ||||||| | |||| || | | || | || | Sbjct 2654458 TTTTCATATTGTACATAAAGTTTATCAAAATCATCAC---------CAAAACAA---TCA 2654411 Query 25868 CCATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACT 25927 ||| | || | | || | ||||| | ||| |||||| | || ||||| Sbjct 2654410 CCA-AGACCCGGACATTCAT--TAGGACACATTAACGACCAATCTGAATCGCTTTCAACA 2654354 Query 25928 TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCT 25987 | ||||||||||||||||| ||| | | | ||||||||||| | |||||| |||| Sbjct 2654353 CGTTTCATAAATAAATCTGGAACCCAAAGTCCGTAAAATAAATCACGCGCTCTTTCTTCT 2654294 Query 25988 TCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTT 26045 ||| ||| ||| || ||||||| || |||||| | | |||||| | |||||||| | Sbjct 2654293 TCTGGTCCTGTG-TTTTTTTTTAACTC-AAGAAATTGGATAATATCCGCATGCCATGGCT 2654236 Query 26046 CTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAG 26105 | ||||| |||||||| || |||||| |||||||| || || || | ||| Sbjct 2654235 CCAAATATATAGCAAATGCGCCAGGTCTTTTATTACCACCTTGGTCAACATAACGAACAG 2654176 Query 26106 TTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAA 26165 | |||| |||| ||||| ||||| || ||| |||| | || || || | | || Sbjct 2654175 TACTATTGTAAACACGTAACATCGGAACCAAACCATTTGATGACCCATTAGTTCCAGAAA 2654116 Query 26166 TCTTGGATCCTGTCG-ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTT 26224 | || ||||| | | | | | ||| | ||| || | ||| |||||| ||| Sbjct 2654115 TAAAAGAGCCTGTAGCACGGATTGTACTGACACTTAAT-CCTACTCCCCCAGCCATCTTT 2654057 Query 26225 GAAATAGCTGCACA--ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCA 26282 |||||| | ||||| | | ||| || || | ||||||| || |||| | ||| Sbjct 2654056 GAAATAACAGCACATCGTTTTAAA--GTGTCATAGATTCCTTCAATAGAATCATCGCTCA 2653999 Query 26283 TTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCG 26342 || ||| ||||| || ||| | | || | | || || | |||||||||||| | Sbjct 2653998 TTGTTAACAAAAAGCAGGAACAAAGCTGGGGTCGTAGGGTGCCGGCATTAAATAATGTTG 2653939 Query 26343 GTG 26345 ||| Sbjct 2653938 GTG 2653936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038189736025